CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003465.1-P	Field mustard	nucleus	96.69	95.9
CDX67857	Canola	nucleus	96.14	95.36
CDX80017	Canola	nucleus	73.28	74.09
CDY42046	Canola	nucleus	74.38	73.37
CDX71711	Canola	mitochondrion	73.28	59.24
TraesCS3B01G171500.1	Wheat	nucleus	57.02	57.98
Zm00001d039349_P002	Maize	nucleus	57.3	57.3
KXG31543	Sorghum	nucleus	57.02	57.18
GSMUA_Achr7P14110_001	Banana	nucleus	56.75	57.06
TraesCS3A01G144700.2	Wheat	nucleus	57.02	57.02
TraesCS3D01G106200.1	Wheat	nucleus	55.92	56.7
TraesCS3D01G153500.1	Wheat	cytosol	56.47	56.47
TraesCS3B01G122400.1	Wheat	nucleus	55.65	56.27
TraesCS3A01G104000.1	Wheat	unclear	55.65	56.27
GSMUA_Achr10P...	Banana	nucleus	55.37	55.68
GSMUA_Achr6P05700_001	Banana	nucleus	52.34	54.13
Os05t0212400-01	Rice	cytosol, nucleus	50.96	52.11
Zm00001d008954_P002	Maize	nucleus	56.47	51.9
Os01t0220200-01	Rice	cytosol, nucleus, plastid	17.08	51.24
GSMUA_Achr6P14310_001	Banana	nucleus	50.41	49.46
CDY53585	Canola	cytosol	6.34	43.4
TraesCS1A01G126500.1	Wheat	cytosol, nucleus, plastid	34.16	43.21
CDY02930	Canola	nucleus	10.74	41.05
CDX76114	Canola	nucleus	10.47	40.0
CDX73396	Canola	nucleus	10.47	40.0
CDY40206	Canola	nucleus	10.47	40.0
CDX80829	Canola	cytosol, nucleus, peroxisome	9.92	39.56
CDY11219	Canola	cytosol	9.92	39.56
CDY20432	Canola	cytosol	8.26	37.97
CDY56714	Canola	mitochondrion, nucleus	30.3	33.54
CDY72004	Canola	extracellular	5.23	33.33
CDY41330	Canola	mitochondrion, nucleus	30.03	33.33
CDY08617	Canola	mitochondrion, nucleus	29.48	32.52
CDY00915	Canola	mitochondrion, nucleus	29.2	31.93
CDY37956	Canola	cytosol	8.26	29.7
CDX93395	Canola	cytosol	8.26	29.7
CDY11376	Canola	cytosol	74.1	16.35

Protein Annotations

EnsemblPlants:CDY25057	EnsemblPlantsGene:GSBRNA2T00028895001	InterPro:CHP01589_pln	PANTHER:PTHR31871	PANTHER:PTHR31871:SF9	PFAM:PF09713
ProteinID:CDY25057	ProteinID:CDY25057.1	SEG:seg	TIGRFAMs:TIGR01589	UniParc:UPI0004EEF81C	UniProt:A0A078GIR9
MapMan:35.2	:	:	:	:	:

Description

BnaC06g17990DBnaC06g17990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIR9]

Coordinates

chrLK032168:+:63945..67168

Molecular Weight (calculated)

39455.5 Da

IEP (calculated)

4.284

GRAVY (calculated)

-0.337

Length

363 amino acids

Sequence
(BLAST)

001: MKSEQCAQKL QSSTQASSQG EQKINQSLDA SPIQDAVSVS APSNDSRKVS RQDIELVQNL IERCLQLYMN KDEVVKTLLT RARIEPAFTS LVWQKLEEGN
101: ADFFRAYYIR LKLKKQIVIF NQLLEHQYHL MKYPPVPPKI PLAPMPNGMH HPMPPVVGMQ IGYPVLPHPQ MHVQGHPHIT AATAMSSCHV VNGVPAPAHL
201: QPLRMSSTND MVVDDTTVED ETPPQVVPPS SGEMAVSPAS VASSGHFPFV DSDMVMETSV LDSEFTADVG ADGGEGGGGG AGNSRDASFD QIPWDFSLSD
301: LTADLSNLGD VYVGDLEALG DYTGSPFLPS DSEILLDSPD QEDIEEFFAD SMPGPPSLNE EKP

Best Arabidopsis Sequence Match ( AT3G61700.2 )
(BLAST)

001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD MYVADLGALG NYPGSPFLPS DSEIFLDSPE QEDIEEFFVD SVPGPRSNSD EEKP

Arabidopsis Description

Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.