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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX93395 Canola cytosol 98.02 98.02
Bra019909.1-P Field mustard cytosol 85.15 95.56
AT1G10657.1 Thale cress cytosol 89.11 72.0
VIT_01s0127g00340.t01 Wine grape cytosol 55.45 56.57
PGSC0003DMT400035154 Potato cytosol 53.47 52.94
KRG99379 Soybean cytosol 52.48 51.96
Solyc05g005230.2.1 Tomato cytosol 52.48 51.46
KRH45644 Soybean cytosol 51.49 50.98
CDY53585 Canola cytosol 24.75 47.17
CDY20432 Canola cytosol 33.66 43.04
CDX80829 Canola cytosol, nucleus, peroxisome 31.68 35.16
CDY11219 Canola cytosol 31.68 35.16
CDY72004 Canola extracellular 19.8 35.09
CDX76114 Canola nucleus 32.67 34.74
CDY02930 Canola nucleus 32.67 34.74
CDX73396 Canola nucleus 32.67 34.74
CDY40206 Canola nucleus 32.67 34.74
CDY42046 Canola nucleus 31.68 8.7
CDX80017 Canola nucleus 30.69 8.64
CDY25057 Canola nucleus 29.7 8.26
CDY08617 Canola mitochondrion, nucleus 26.73 8.21
CDX67857 Canola nucleus 29.7 8.2
CDY00915 Canola mitochondrion, nucleus 26.73 8.13
CDY41330 Canola mitochondrion, nucleus 25.74 7.95
CDY56714 Canola mitochondrion, nucleus 25.74 7.93
CDX71711 Canola mitochondrion 29.7 6.68
CDY11376 Canola cytosol 30.69 1.88
Protein Annotations
EnsemblPlants:CDY37956EnsemblPlantsGene:GSBRNA2T00064988001InterPro:CHP01589_plnPANTHER:PTHR31871PANTHER:PTHR31871:SF5PFAM:PF09713
ProteinID:CDY37956ProteinID:CDY37956.1TIGRFAMs:TIGR01589UniParc:UPI0004EC56B3UniProt:A0A078HJV3MapMan:35.2
Description
BnaC05g08180DBnaC05g08180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJV3]
Coordinates
chrLK032413:-:20288..21386
Molecular Weight (calculated)
12047.7 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.403
Length
101 amino acids
Sequence
(BLAST)
001: MCTHHDDQSQ QNLPCLHCQP HTYIRMVQHM IERCIILRMT RDECVKALDH HASILPLVTL TIWRGLQREN KDFFETYGHF VSPTPFLSGY VRRSPRFARR
101: I
Best Arabidopsis Sequence Match ( AT1G10657.2 )
(BLAST)
001: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVWRGLQREN KDFFETYGHF VSPRPFLSGY VRRSPRFAKR
101: I
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.