Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX93395 | Canola | cytosol | 98.02 | 98.02 |
Bra019909.1-P | Field mustard | cytosol | 85.15 | 95.56 |
AT1G10657.1 | Thale cress | cytosol | 89.11 | 72.0 |
VIT_01s0127g00340.t01 | Wine grape | cytosol | 55.45 | 56.57 |
PGSC0003DMT400035154 | Potato | cytosol | 53.47 | 52.94 |
KRG99379 | Soybean | cytosol | 52.48 | 51.96 |
Solyc05g005230.2.1 | Tomato | cytosol | 52.48 | 51.46 |
KRH45644 | Soybean | cytosol | 51.49 | 50.98 |
CDY53585 | Canola | cytosol | 24.75 | 47.17 |
CDY20432 | Canola | cytosol | 33.66 | 43.04 |
CDX80829 | Canola | cytosol, nucleus, peroxisome | 31.68 | 35.16 |
CDY11219 | Canola | cytosol | 31.68 | 35.16 |
CDY72004 | Canola | extracellular | 19.8 | 35.09 |
CDX76114 | Canola | nucleus | 32.67 | 34.74 |
CDY02930 | Canola | nucleus | 32.67 | 34.74 |
CDX73396 | Canola | nucleus | 32.67 | 34.74 |
CDY40206 | Canola | nucleus | 32.67 | 34.74 |
CDY42046 | Canola | nucleus | 31.68 | 8.7 |
CDX80017 | Canola | nucleus | 30.69 | 8.64 |
CDY25057 | Canola | nucleus | 29.7 | 8.26 |
CDY08617 | Canola | mitochondrion, nucleus | 26.73 | 8.21 |
CDX67857 | Canola | nucleus | 29.7 | 8.2 |
CDY00915 | Canola | mitochondrion, nucleus | 26.73 | 8.13 |
CDY41330 | Canola | mitochondrion, nucleus | 25.74 | 7.95 |
CDY56714 | Canola | mitochondrion, nucleus | 25.74 | 7.93 |
CDX71711 | Canola | mitochondrion | 29.7 | 6.68 |
CDY11376 | Canola | cytosol | 30.69 | 1.88 |
Protein Annotations
EnsemblPlants:CDY37956 | EnsemblPlantsGene:GSBRNA2T00064988001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF5 | PFAM:PF09713 |
ProteinID:CDY37956 | ProteinID:CDY37956.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0004EC56B3 | UniProt:A0A078HJV3 | MapMan:35.2 |
Description
BnaC05g08180DBnaC05g08180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJV3]
Coordinates
chrLK032413:-:20288..21386
Molecular Weight (calculated)
12047.7 Da
IEP (calculated)
8.781
GRAVY (calculated)
-0.403
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTHHDDQSQ QNLPCLHCQP HTYIRMVQHM IERCIILRMT RDECVKALDH HASILPLVTL TIWRGLQREN KDFFETYGHF VSPTPFLSGY VRRSPRFARR
101: I
101: I
001: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVWRGLQREN KDFFETYGHF VSPRPFLSGY VRRSPRFAKR
101: I
101: I
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.