Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37956 | Canola | cytosol | 98.02 | 98.02 |
| Bra019909.1-P | Field mustard | cytosol | 85.15 | 95.56 |
| AT1G10657.1 | Thale cress | cytosol | 89.11 | 72.0 |
| VIT_01s0127g00340.t01 | Wine grape | cytosol | 56.44 | 57.58 |
| KRG99379 | Soybean | cytosol | 53.47 | 52.94 |
| PGSC0003DMT400035154 | Potato | cytosol | 53.47 | 52.94 |
| KRH45644 | Soybean | cytosol | 52.48 | 51.96 |
| Solyc05g005230.2.1 | Tomato | cytosol | 52.48 | 51.46 |
| CDY53585 | Canola | cytosol | 24.75 | 47.17 |
| CDY20432 | Canola | cytosol | 33.66 | 43.04 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 32.67 | 36.26 |
| CDY11219 | Canola | cytosol | 32.67 | 36.26 |
| CDY72004 | Canola | extracellular | 19.8 | 35.09 |
| CDY02930 | Canola | nucleus | 32.67 | 34.74 |
| CDY40206 | Canola | nucleus | 32.67 | 34.74 |
| CDX73396 | Canola | nucleus | 32.67 | 34.74 |
| CDX76114 | Canola | nucleus | 32.67 | 34.74 |
| CDY42046 | Canola | nucleus | 31.68 | 8.7 |
| CDX80017 | Canola | nucleus | 30.69 | 8.64 |
| CDY25057 | Canola | nucleus | 29.7 | 8.26 |
| CDY08617 | Canola | mitochondrion, nucleus | 26.73 | 8.21 |
| CDX67857 | Canola | nucleus | 29.7 | 8.2 |
| CDY00915 | Canola | mitochondrion, nucleus | 26.73 | 8.13 |
| CDY41330 | Canola | mitochondrion, nucleus | 25.74 | 7.95 |
| CDY56714 | Canola | mitochondrion, nucleus | 25.74 | 7.93 |
| CDX71711 | Canola | mitochondrion | 29.7 | 6.68 |
| CDY11376 | Canola | cytosol | 30.69 | 1.88 |
Protein Annotations
| EnsemblPlants:CDX93395 | EnsemblPlantsGene:GSBRNA2T00156053001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF5 | PFAM:PF09713 |
| ProteinID:CDX93395 | ProteinID:CDX93395.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0004EDC688 | MapMan:35.2 | : |
Description
BnaA06g06530D
Coordinates
chrLK031876:-:17009..18111
Molecular Weight (calculated)
12117.7 Da
IEP (calculated)
9.083
GRAVY (calculated)
-0.513
Length
101 amino acids
Sequence
(BLAST)
(BLAST)
001: MCTHHDDQSQ QNLPCLHCQP HTYIRMVQHM IERCIILRMT RDECVKALDH HASIQPLVTL TIWRGLQREN KDFFETYGHF VSPRPFLSGY VRRSPRFARR
101: I
101: I
001: MCTHADESQH NNLPCLHCQP HSYIRMVQHM IERCILLRMT RDECVKALDH HASILPLVTL TVWRGLQREN KDFFETYGHF VSPRPFLSGY VRRSPRFAKR
101: I
101: I
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q0WR17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.