Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007149.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX73396 | Canola | nucleus | 100.0 | 100.0 |
| AT3G55240.1 | Thale cress | nucleus | 97.89 | 97.89 |
| CDX76114 | Canola | nucleus | 92.63 | 92.63 |
| CDY02930 | Canola | nucleus | 92.63 | 92.63 |
| CDY20432 | Canola | cytosol | 56.84 | 68.35 |
| CDY53585 | Canola | cytosol | 37.89 | 67.92 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 53.68 | 56.04 |
| CDY11219 | Canola | cytosol | 53.68 | 56.04 |
| CDY72004 | Canola | extracellular | 32.63 | 54.39 |
| CDX93395 | Canola | cytosol | 34.74 | 32.67 |
| CDY37956 | Canola | cytosol | 34.74 | 32.67 |
| CDY41330 | Canola | mitochondrion, nucleus | 40.0 | 11.62 |
| CDY56714 | Canola | mitochondrion, nucleus | 40.0 | 11.59 |
| CDY08617 | Canola | mitochondrion, nucleus | 40.0 | 11.55 |
| CDY00915 | Canola | mitochondrion, nucleus | 40.0 | 11.45 |
| CDY25057 | Canola | nucleus | 40.0 | 10.47 |
| CDX67857 | Canola | nucleus | 38.95 | 10.11 |
| CDY42046 | Canola | nucleus | 38.95 | 10.05 |
| CDX80017 | Canola | nucleus | 37.89 | 10.03 |
| CDX71711 | Canola | mitochondrion | 35.79 | 7.57 |
| CDY11376 | Canola | cytosol | 35.79 | 2.07 |
Protein Annotations
| EnsemblPlants:CDY40206 | EnsemblPlantsGene:GSBRNA2T00069353001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 |
| ProteinID:CDY40206 | ProteinID:CDY40206.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0002542A28 | UniProt:A0A078HR83 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA09g34880DBnaA09g34880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HR83]
Coordinates
chrLK032466:-:52573..53637
Molecular Weight (calculated)
11043.0 Da
IEP (calculated)
4.768
GRAVY (calculated)
-0.761
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MAGSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSP KESDD
1: MADSSSASYI HMVQHMIEKC LIFHMSKEEC VEALSKHANI TPVITSTVWK ELEKENKEFF KAYEERQSKQ EQMSEEETNQ MIQKIISDSS KESDD
Arabidopsis Description
Uncharacterized protein At3g55240 [Source:UniProtKB/TrEMBL;Acc:Q9M3C7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.