Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41330 | Canola | mitochondrion, nucleus | 97.87 | 98.17 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 87.5 | 88.58 |
| CDY00915 | Canola | mitochondrion, nucleus | 88.72 | 87.65 |
| CDY08617 | Canola | mitochondrion, nucleus | 87.8 | 87.54 |
| AT5G04090.6 | Thale cress | nucleus | 65.85 | 67.08 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 57.01 | 57.54 |
| KRH66806 | Soybean | nucleus | 58.23 | 57.01 |
| KRG95131 | Soybean | nucleus | 57.62 | 55.75 |
| PGSC0003DMT400076756 | Potato | nucleus | 51.52 | 54.17 |
| Solyc10g079710.1.1 | Tomato | nucleus | 44.21 | 51.06 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 48.78 | 50.0 |
| PGSC0003DMT400076729 | Potato | nucleus | 47.26 | 49.68 |
| GSMUA_Achr10P... | Banana | nucleus | 47.56 | 48.6 |
| Solyc10g079590.1.1 | Tomato | nucleus | 46.34 | 47.8 |
| GSMUA_Achr11P... | Banana | nucleus | 47.26 | 47.69 |
| Os02t0137100-01 | Rice | nucleus | 47.56 | 47.42 |
| Solyc01g005640.2.1 | Tomato | nucleus | 43.29 | 47.18 |
| KXG29427 | Sorghum | nucleus | 46.04 | 46.89 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 46.04 | 46.6 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 45.73 | 46.3 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 42.99 | 46.23 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 42.68 | 45.9 |
| PGSC0003DMT400081823 | Potato | nucleus | 44.21 | 45.6 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 42.38 | 45.57 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 43.6 | 42.31 |
| EER90343 | Sorghum | nucleus | 35.67 | 40.62 |
| CDX73396 | Canola | nucleus | 11.59 | 40.0 |
| CDX76114 | Canola | nucleus | 11.59 | 40.0 |
| CDY40206 | Canola | nucleus | 11.59 | 40.0 |
| CDY02930 | Canola | nucleus | 11.59 | 40.0 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 10.67 | 38.46 |
| CDY11219 | Canola | cytosol | 10.67 | 38.46 |
| Zm00001d054004_P001 | Maize | nucleus | 39.94 | 38.42 |
| CDY53585 | Canola | cytosol | 6.1 | 37.74 |
| HORVU6Hr1G018770.3 | Barley | plastid | 45.43 | 36.34 |
| CDY20432 | Canola | cytosol | 8.54 | 35.44 |
| CDX80017 | Canola | nucleus | 36.28 | 33.15 |
| CDY42046 | Canola | nucleus | 36.28 | 32.34 |
| CDX67857 | Canola | nucleus | 33.84 | 30.33 |
| CDY25057 | Canola | nucleus | 33.54 | 30.3 |
| CDY72004 | Canola | extracellular | 4.88 | 28.07 |
| CDY37956 | Canola | cytosol | 7.93 | 25.74 |
| CDX93395 | Canola | cytosol | 7.93 | 25.74 |
| CDX71711 | Canola | mitochondrion | 34.76 | 25.39 |
| CDY11376 | Canola | cytosol | 34.76 | 6.93 |
Protein Annotations
| EnsemblPlants:CDY56714 | EnsemblPlantsGene:GSBRNA2T00019948001 | InterPro:CHP01589_pln | ncoils:Coil | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | ProteinID:CDY56714 | ProteinID:CDY56714.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI0004EABD23 |
| UniProt:A0A078J388 | MapMan:35.2 | : | : | : | : |
Description
BnaC01g38710DBnaC01g38710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J388]
Coordinates
chrLK033513:+:39214..42354
Molecular Weight (calculated)
36515.5 Da
IEP (calculated)
4.849
GRAVY (calculated)
-0.598
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGGTVRRV SRQDIQLVQN LIERCLQLYM NQKEVVETLL EQAKIEPGFT ELVWQKLEEE NREFFKAYYL RLMVKHQIME FNKLLEQQVH HMQQMHPSGV
101: ASVQNTNGSH IQSMNQKHLG YASEHTNQSL KSMPSSLSNA YLNGSSTLNT TNVASSVNIS THARRVDTSS PNMLSSQTTT NMPMMQGMNG GGGMIKSETA
201: FTSPASSFMY GGERNALEGH STVRDTTSIS TFGNESNNNQ QPLSETLLDS EAATFGFLGQ IPRNFSLSDL TADFSQSSEI LESYDKSPFL VSDGENFLDS
301: CDRGEYQGDN KRLETISEGF SYDNLGSE
101: ASVQNTNGSH IQSMNQKHLG YASEHTNQSL KSMPSSLSNA YLNGSSTLNT TNVASSVNIS THARRVDTSS PNMLSSQTTT NMPMMQGMNG GGGMIKSETA
201: FTSPASSFMY GGERNALEGH STVRDTTSIS TFGNESNNNQ QPLSETLLDS EAATFGFLGQ IPRNFSLSDL TADFSQSSEI LESYDKSPFL VSDGENFLDS
301: CDRGEYQGDN KRLETISEGF SYDNLGSE
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.