Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29427 | Sorghum | nucleus | 71.55 | 75.78 |
| Os02t0137100-01 | Rice | nucleus | 63.64 | 65.96 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 58.65 | 61.73 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 58.65 | 61.73 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 55.72 | 56.21 |
| HORVU6Hr1G018770.3 | Barley | plastid | 62.76 | 52.2 |
| GSMUA_Achr11P... | Banana | nucleus | 46.04 | 48.31 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 44.28 | 47.19 |
| GSMUA_Achr10P... | Banana | nucleus | 43.4 | 46.11 |
| PGSC0003DMT400076756 | Potato | nucleus | 39.59 | 43.27 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 39.59 | 41.67 |
| Solyc10g079710.1.1 | Tomato | nucleus | 34.02 | 40.85 |
| CDY08617 | Canola | mitochondrion, nucleus | 39.0 | 40.43 |
| AT5G04090.6 | Thale cress | nucleus | 38.12 | 40.37 |
| CDY41330 | Canola | mitochondrion, nucleus | 38.71 | 40.37 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 38.71 | 40.12 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 38.12 | 40.0 |
| CDY56714 | Canola | mitochondrion, nucleus | 38.42 | 39.94 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 37.83 | 39.69 |
| CDY00915 | Canola | mitochondrion, nucleus | 38.12 | 39.16 |
| PGSC0003DMT400076729 | Potato | nucleus | 35.78 | 39.1 |
| KRG95131 | Soybean | nucleus | 38.12 | 38.35 |
| KRH66806 | Soybean | nucleus | 37.54 | 38.21 |
| Solyc10g079590.1.1 | Tomato | nucleus | 35.48 | 38.05 |
| Zm00001d047779_P001 | Maize | nucleus | 8.5 | 35.8 |
| Solyc01g005640.2.1 | Tomato | nucleus | 31.09 | 35.22 |
| Zm00001d028675_P001 | Maize | cytosol, nucleus, plastid | 8.21 | 35.0 |
| PGSC0003DMT400081823 | Potato | nucleus | 31.38 | 33.65 |
| Zm00001d012431_P001 | Maize | cytosol, nucleus, plastid | 8.8 | 29.13 |
| Zm00001d039349_P002 | Maize | nucleus | 29.91 | 28.1 |
| Zm00001d038387_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 7.62 | 26.26 |
| Zm00001d008954_P002 | Maize | nucleus | 29.91 | 25.82 |
| Zm00001d042940_P001 | Maize | nucleus | 10.56 | 18.85 |
Protein Annotations
| EnsemblPlants:Zm00001d054004_P001 | EnsemblPlants:Zm00001d054004_T001 | EnsemblPlantsGene:Zm00001d054004 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | ProteinID:AQK61033.1 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI000842D5AE | UniProt:A0A1D6QUH8 |
| MapMan:35.2 | : | : | : | : | : |
Description
plant-specific domain TIGR01589 family protein
Coordinates
chr4:-:245028338..245031545
Molecular Weight (calculated)
37299.4 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.507
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMETGDPGK LLRGHSLSRV PPASPFPRLR PQGDLVRAGD ERARASGMPG EEDVRKVSRE DIQLVQNLIE RCLQLYMNQK EVVDTLSFQA KIEPSFTEIV
101: WQRLEEENRD FFKAYYARLM LMNQIVSFNK LLEQQHQIMN KDHHYGMPAM PSTAPNGSNT NMLNQAMPFL PDTIPSTAMQ DNLLSNGGSS SIVNGAPSND
201: QCSYSGKVAH GLPGVMDASS SLLAAHKSTV GQFNGHNGTT TKTESDYSSN SDFGLGNETV FLEQSFGDIS GGSFSSSELN GQPVGSSSYG FLSQIPCNFS
301: LSDWTDCFSQ SSEIFENYGG SPFIPYDANN IPESSARENT G
101: WQRLEEENRD FFKAYYARLM LMNQIVSFNK LLEQQHQIMN KDHHYGMPAM PSTAPNGSNT NMLNQAMPFL PDTIPSTAMQ DNLLSNGGSS SIVNGAPSND
201: QCSYSGKVAH GLPGVMDASS SLLAAHKSTV GQFNGHNGTT TKTESDYSSN SDFGLGNETV FLEQSFGDIS GGSFSSSELN GQPVGSSSYG FLSQIPCNFS
301: LSDWTDCFSQ SSEIFENYGG SPFIPYDANN IPESSARENT G
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.