Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g005640.2.1 | Tomato | nucleus | 90.88 | 96.01 |
| PGSC0003DMT400076756 | Potato | nucleus | 49.69 | 50.64 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 51.26 | 50.15 |
| KRG95131 | Soybean | nucleus | 51.26 | 48.08 |
| KRH66806 | Soybean | nucleus | 50.63 | 48.06 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 46.86 | 45.99 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 46.23 | 44.68 |
| CDY08617 | Canola | mitochondrion, nucleus | 46.23 | 44.68 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 45.28 | 44.31 |
| CDY56714 | Canola | mitochondrion, nucleus | 45.6 | 44.21 |
| CDY41330 | Canola | mitochondrion, nucleus | 45.28 | 44.04 |
| PGSC0003DMT400076729 | Potato | nucleus | 43.08 | 43.91 |
| CDY00915 | Canola | mitochondrion, nucleus | 45.6 | 43.67 |
| GSMUA_Achr10P... | Banana | nucleus | 43.71 | 43.3 |
| AT5G04090.6 | Thale cress | nucleus | 43.4 | 42.86 |
| GSMUA_Achr11P... | Banana | nucleus | 43.4 | 42.46 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 40.57 | 42.3 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 42.45 | 42.19 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 40.25 | 41.97 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 39.94 | 41.64 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 41.82 | 41.05 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 41.82 | 41.05 |
| Os02t0137100-01 | Rice | nucleus | 42.45 | 41.03 |
| EER90343 | Sorghum | nucleus | 36.48 | 40.28 |
| KXG29427 | Sorghum | nucleus | 39.62 | 39.13 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 39.31 | 36.98 |
| PGSC0003DMT400061428 | Potato | nucleus | 11.32 | 35.29 |
| HORVU6Hr1G018770.3 | Barley | plastid | 42.77 | 33.17 |
| PGSC0003DMT400060454 | Potato | cytosol | 10.69 | 32.69 |
| Zm00001d054004_P001 | Maize | nucleus | 33.65 | 31.38 |
| PGSC0003DMT400035154 | Potato | cytosol | 9.75 | 30.39 |
| PGSC0003DMT400024865 | Potato | nucleus | 32.08 | 27.64 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400081823 | EnsemblPlantsGene:PGSC0003DMG400032127 | EntrezGene:102594587 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | PGSC:PGSC0003DMG400032127 | RefSeq:XP_006354129.1 | RefSeq:XP_015167144.1 | SEG:seg | TIGRFAMs:TIGR01589 |
| UniParc:UPI000294C2A0 | UniProt:M1D531 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032127]
Coordinates
chr1:+:1252517..1260989
Molecular Weight (calculated)
35055.1 Da
IEP (calculated)
4.398
GRAVY (calculated)
-0.431
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGDGPKVS CEEIQMVQNR IEYCLRQYMS RKEVVNTLFI QDNIEPTFTE LVWQKLEEEN QEFFQAYYLK LMVKEQIIEF NRLLSEQVKM TQQVPSAIAS
101: LPMSNGCNIM PMHQSSTCGA AENVGTAAKP NGMHEPVHAD RPNAFSNSSS SVLSCMQTTI DIPSQSRKID GPPSMFLGQP SNMGMRQTMD GRIIKTEPIY
201: GGNSPFAFGP HGTYLESRSA MGDASVSSFS SVESNTQPLN EPLLDADTSS FGYLGDIPQN FGFSDLTVDF TNSSDILGSY SRTPFLATDT GNLLDSNGGI
301: ERLTNPSEKL RYTNFSGD
101: LPMSNGCNIM PMHQSSTCGA AENVGTAAKP NGMHEPVHAD RPNAFSNSSS SVLSCMQTTI DIPSQSRKID GPPSMFLGQP SNMGMRQTMD GRIIKTEPIY
201: GGNSPFAFGP HGTYLESRSA MGDASVSSFS SVESNTQPLN EPLLDADTSS FGYLGDIPQN FGFSDLTVDF TNSSDILGSY SRTPFLATDT GNLLDSNGGI
301: ERLTNPSEKL RYTNFSGD
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.