Factsheet for VIT_08s0007g05400.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95131	Soybean	nucleus	64.0	61.36
KRH66806	Soybean	nucleus	62.77	60.9
AT3G10250.5	Thale cress	mitochondrion, nucleus	60.31	60.49
CDY41330	Canola	mitochondrion, nucleus	58.15	57.8
Bra034101.1-P	Field mustard	mitochondrion, nucleus	57.54	57.54
Bra029826.1-P	Field mustard	mitochondrion, nucleus	58.15	57.45
CDY56714	Canola	mitochondrion, nucleus	57.54	57.01
CDY08617	Canola	mitochondrion, nucleus	57.54	56.84
CDY00915	Canola	mitochondrion, nucleus	57.23	56.02
AT5G04090.6	Thale cress	nucleus	52.62	53.11
GSMUA_Achr10P...	Banana	nucleus	52.0	52.65
Solyc01g005640.2.1	Tomato	nucleus	48.0	51.83
GSMUA_Achr11P...	Banana	nucleus	51.69	51.69
PGSC0003DMT400081823	Potato	nucleus	50.15	51.26
GSMUA_Achr1P08340_001	Banana	cytosol	49.23	50.0
Os02t0137100-01	Rice	nucleus	49.54	48.94
TraesCS6A01G104900.1	Wheat	nucleus	48.31	48.46
TraesCS6D01G093800.1	Wheat	nucleus	48.0	48.15
KXG29427	Sorghum	nucleus	46.77	47.2
TraesCS7A01G413700.1	Wheat	nucleus	42.77	45.57
TraesCS7D01G407000.1	Wheat	nucleus	42.46	45.25
TraesCS7B01G313700.1	Wheat	nucleus	42.15	44.92
TraesCS6B01G134100.4	Wheat	extracellular	45.54	43.79
VIT_00s0317g00020.t01	Wine grape	nucleus	12.0	41.94
EER90343	Sorghum	nucleus	36.31	40.97
HORVU6Hr1G018770.3	Barley	plastid	48.31	38.29
Zm00001d054004_P001	Maize	nucleus	39.69	37.83
VIT_00s0317g00030.t01	Wine grape	nucleus	12.31	36.36
VIT_08s0040g02650.t01	Wine grape	nucleus	10.46	36.17
VIT_16s0100g00590.t01	Wine grape	nucleus	23.69	35.81
VIT_00s0317g00010.t01	Wine grape	cytosol	6.15	34.48
VIT_14s0036g00440.t01	Wine grape	nucleus	10.15	33.33
VIT_15s0046g00990.t01	Wine grape	nucleus	36.62	32.34
VIT_16s0050g02580.t01	Wine grape	nucleus, plastid	33.85	30.64
VIT_01s0127g00340.t01	Wine grape	cytosol	8.62	28.28

Protein Annotations

EntrezGene:100265940	wikigene:100265940	MapMan:35.2	ProteinID:CBI30105	ProteinID:CBI30105.3	InterPro:CHP01589_pln
ncoils:Coil	UniProt:D7TIM9	EMBL:FN595991	EntrezGene:LOC100265940	wikigene:LOC100265940	PFAM:PF09713
PANTHER:PTHR31871	PANTHER:PTHR31871:SF1	TIGRFAMs:TIGR01589	UniParc:UPI0001983F58	ArrayExpress:VIT_08s0007g05400	EnsemblPlantsGene:VIT_08s0007g05400
EnsemblPlants:VIT_08s0007g05400.t01	unigene:Vvi.8743	RefSeq:XP_002274015	RefSeq:XP_002274015.1	RefSeq:XP_010653954.1	RefSeq:XP_010653955.1
RefSeq:XP_010653956.1	RefSeq:XP_010653957.1	RefSeq:XP_010653958.1	RefSeq:XP_019077307.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:19342961..19353562

Molecular Weight (calculated)

35742.0 Da

IEP (calculated)

4.583

GRAVY (calculated)

-0.408

Length

325 amino acids

Sequence
(BLAST)

001: MSSGAARRVS RQDIQLVQNL IERCLQLYMN QKEVVETLLD QAKIEPDFTE LVWQKLVEEN QDFFEAYHLR LMVKHQINVF NELLKQQVDL MHRICPARVD
101: TVPIPNGSQL SALQQNSACY PSEHVGPSMK PSSMHRHISS GLSNAFTNGG SSLQTSMHTA VDMSANTCRI DAPQDMLSTR SPNLGLMQGM NGGMIKPEAG
201: YSGSSPFMFG ADNTALEKRV AIGDASVTPF SSVVSNSQTL GEPLLDSDTS TYGFLGQIPQ SFSLSDLTAG FSQSSDILES YPRSPFLTTD TDNFMDSRGR
301: GENQGDSKRL DTISEGLSYE DFPSD

Best Arabidopsis Sequence Match ( AT3G10250.2 )
(BLAST)

001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE

Arabidopsis Description

AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.