Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 81.31 | 80.31 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 73.52 | 73.75 |
| Os02t0137100-01 | Rice | nucleus | 58.26 | 56.84 |
| TraesCS6A01G104900.1 | Wheat | nucleus | 56.7 | 56.17 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 56.7 | 56.17 |
| KXG29427 | Sorghum | nucleus | 55.45 | 55.28 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 52.65 | 52.0 |
| TraesCS6B01G134100.4 | Wheat | extracellular | 53.27 | 50.59 |
| TraesCS7B01G313700.1 | Wheat | nucleus | 47.98 | 50.49 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 50.47 | 50.0 |
| TraesCS7D01G407000.1 | Wheat | nucleus | 47.35 | 49.84 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 47.35 | 49.84 |
| KRH66806 | Soybean | nucleus | 51.71 | 49.55 |
| KRG95131 | Soybean | nucleus | 51.71 | 48.97 |
| CDY41330 | Canola | mitochondrion, nucleus | 49.22 | 48.32 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 48.91 | 48.31 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 49.22 | 48.02 |
| CDY00915 | Canola | mitochondrion, nucleus | 49.22 | 47.59 |
| CDY56714 | Canola | mitochondrion, nucleus | 48.6 | 47.56 |
| CDY08617 | Canola | mitochondrion, nucleus | 48.6 | 47.42 |
| PGSC0003DMT400076756 | Potato | nucleus | 45.17 | 46.47 |
| EER90343 | Sorghum | nucleus | 41.43 | 46.18 |
| HORVU6Hr1G018770.3 | Barley | plastid | 56.39 | 44.15 |
| PGSC0003DMT400076729 | Potato | nucleus | 42.68 | 43.91 |
| Solyc01g005640.2.1 | Tomato | nucleus | 41.12 | 43.85 |
| AT5G04090.6 | Thale cress | nucleus | 43.93 | 43.79 |
| PGSC0003DMT400081823 | Potato | nucleus | 43.3 | 43.71 |
| Zm00001d054004_P001 | Maize | nucleus | 46.11 | 43.4 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 10.59 | 43.04 |
| Solyc10g079590.1.1 | Tomato | nucleus | 42.37 | 42.77 |
| GSMUA_Achr10P... | Banana | cytosol | 12.15 | 41.94 |
| Solyc10g079710.1.1 | Tomato | nucleus | 36.45 | 41.2 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 11.84 | 39.58 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 9.35 | 38.46 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 11.21 | 37.11 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 10.9 | 36.08 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 35.51 | 32.48 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 35.83 | 31.86 |
| GSMUA_Achr10P... | Banana | nucleus | 35.51 | 31.58 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 34.89 | 30.27 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P07700_001 | EnsemblPlants:GSMUA_Achr10T07700_001 | EnsemblPlantsGene:GSMUA_Achr10G07700_001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 |
| PFAM:PF09713 | TIGRFAMs:TIGR01589 | UniParc:UPI00029698B1 | UniProt:M0RG96 | MapMan:35.2 | : |
Description
plant-specific domain TIGR01589 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G07700_001]
Coordinates
chr10:-:17853095..17859719
Molecular Weight (calculated)
35365.2 Da
IEP (calculated)
4.179
GRAVY (calculated)
-0.457
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGEVRKVS RQDIQLVQNL IERCLQLYMD QKEVVETLSL QAKIEPSFTQ LVWQKLEEEN REFFEAYHVR LILKNQILVF NRLLEKQVEL MQEACPTGIS
101: TISLPNGSNA PALHQAPSCY MSQQTSTSSR LDDMLCAGGF TSALVNGGPS GHGNYLGNDS AILAGSMNAS TSMLSTPNTN MGRIPGMNGM IVKSEPNYPN
201: NSEFPFSNDN SMLEAHQPIG DTSAGSFGSS ELSGQPLQDN LLDIDTSSLG FGQIPRNFSF SDLADDFTHC SDILENYDRS PYLPPDSNNL SDSPAREFKE
301: EDIRKLDTIS EGVSYEEFGS D
101: TISLPNGSNA PALHQAPSCY MSQQTSTSSR LDDMLCAGGF TSALVNGGPS GHGNYLGNDS AILAGSMNAS TSMLSTPNTN MGRIPGMNGM IVKSEPNYPN
201: NSEFPFSNDN SMLEAHQPIG DTSAGSFGSS ELSGQPLQDN LLDIDTSSLG FGQIPRNFSF SDLADDFTHC SDILENYDRS PYLPPDSNNL SDSPAREFKE
301: EDIRKLDTIS EGVSYEEFGS D
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.