Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 87.53 | 87.53 |
| KXG31543 | Sorghum | nucleus | 72.02 | 71.82 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 68.98 | 70.94 |
| Zm00001d039349_P002 | Maize | nucleus | 70.91 | 70.52 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 71.19 | 69.84 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 68.14 | 68.72 |
| PGSC0003DMT400024865 | Potato | nucleus | 70.08 | 68.56 |
| TraesCS3A01G104000.1 | Wheat | unclear | 68.14 | 68.52 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 67.87 | 68.25 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 67.31 | 68.07 |
| Solyc01g010520.2.1 | Tomato | nucleus | 67.31 | 67.88 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 67.59 | 67.22 |
| KRH47919 | Soybean | nucleus | 66.2 | 66.57 |
| KRH06484 | Soybean | nucleus | 66.76 | 66.39 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 66.76 | 66.39 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 67.87 | 66.22 |
| CDX80017 | Canola | nucleus | 65.37 | 65.74 |
| Bra004538.1-P | Field mustard | nucleus | 65.1 | 65.46 |
| Zm00001d008954_P002 | Maize | nucleus | 71.47 | 65.32 |
| CDY42046 | Canola | nucleus | 66.48 | 65.22 |
| AT2G46420.3 | Thale cress | nucleus | 64.82 | 64.46 |
| AT3G61700.2 | Thale cress | nucleus | 64.82 | 64.29 |
| KRG97168 | Soybean | nucleus | 62.05 | 62.57 |
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 36.57 | 61.4 |
| Solyc05g007270.2.1 | Tomato | cytosol | 68.42 | 61.14 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 59.83 | 60.85 |
| CDX67857 | Canola | nucleus | 57.89 | 57.1 |
| Bra003465.1-P | Field mustard | nucleus | 57.62 | 56.83 |
| CDY25057 | Canola | nucleus | 57.06 | 56.75 |
| Os01t0220200-01 | Rice | cytosol, nucleus, plastid | 18.56 | 55.37 |
| TraesCS1A01G126500.1 | Wheat | cytosol, nucleus, plastid | 42.11 | 52.96 |
| CDX71711 | Canola | mitochondrion | 59.56 | 47.88 |
| GSMUA_Achr9P03160_001 | Banana | cytosol | 10.25 | 46.84 |
| GSMUA_Achr10P... | Banana | cytosol | 10.53 | 40.86 |
| GSMUA_Achr2P16150_001 | Banana | cytosol | 10.25 | 38.54 |
| GSMUA_Achr7P15290_001 | Banana | cytosol | 8.31 | 38.46 |
| GSMUA_Achr9P28360_001 | Banana | cytosol | 10.25 | 38.14 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 33.8 | 38.12 |
| GSMUA_Achr4P30540_001 | Banana | cytosol, nucleus, plastid | 9.97 | 37.11 |
| GSMUA_Achr11P... | Banana | nucleus | 32.41 | 36.0 |
| GSMUA_Achr10P... | Banana | nucleus | 31.86 | 35.83 |
| CDY11376 | Canola | cytosol | 59.0 | 12.95 |
| Bra007627.1-P | Field mustard | cytosol | 58.73 | 12.89 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P14110_001 | EnsemblPlants:GSMUA_Achr7T14110_001 | EnsemblPlantsGene:GSMUA_Achr7G14110_001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 |
| PFAM:PF09713 | SEG:seg | TIGRFAMs:TIGR01589 | UniParc:UPI000296338C | UniProt:M0THE8 | MapMan:35.2 |
Description
plant-specific domain TIGR01589 family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G14110_001]
Coordinates
chr7:-:11278291..11288926
Molecular Weight (calculated)
39189.9 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.386
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTSQEPQGT PEVQPSSEAS HDLQGDHQNS PVVEAPKAES GSASVASSNS RKVSREDIEL VQNLIERCLQ LYMNRGEVVR TLSSRARIEP GFTTLVWQKL
101: EEENSEFFRA YYIRLKLKKQ IILFNHLLEH QYHLMKYPVQ PKVPLTPIQN GIHHMPVNLP MGYPVLPQHP MPPTVQPHVD PMGCGLSSCH VVNGIPAPGS
201: FHPIRLNSGT NGTTEATHTA PPCSASMSEM AVSPASVASS NHFPFTPEIS GIGMDASALD TSFPSDVANS GELHLGPDGV GSSRDSIRSL GHLWNFSLSD
301: LTADLTNLGD LGVLGDYDGS PFLPSDSDIL LDSPEQDDIV EEYFADIATG SCSHQSDEEK S
101: EEENSEFFRA YYIRLKLKKQ IILFNHLLEH QYHLMKYPVQ PKVPLTPIQN GIHHMPVNLP MGYPVLPQHP MPPTVQPHVD PMGCGLSSCH VVNGIPAPGS
201: FHPIRLNSGT NGTTEATHTA PPCSASMSEM AVSPASVASS NHFPFTPEIS GIGMDASALD TSFPSDVANS GELHLGPDGV GSSRDSIRSL GHLWNFSLSD
301: LTADLTNLGD LGVLGDYDGS PFLPSDSDIL LDSPEQDDIV EEYFADIATG SCSHQSDEEK S
001: MKNGQELQSS TQVSHESQGE QKVNLSVEAP IQDSGSVSAS SNDGRKVSRQ DIELVQNLIE RCLQLYMSRD EVVKTLLTRA RIDPGFTTLV WQKLEEENAE
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
101: FFRAYYIRLK LKKQIVVFNH LLEHQYHLTK YNVHSKVPLV PMQNGIHPMA SVNNMPMGYP VLQHPQMHAQ GHPHLDPMSC GMSSCHVVNG VPAPANFQPM
201: RINSGNDMVI DTTMAEPTPM IPPNSGMSDM PVSPASVASS GHFPFAASDM SGMGMDTSAL DSAFTSDVGT SVGLQLGSDG GAGNSRDPLR PFDQIPWNFS
301: LSDLTADLSN LGDLGALGNY PGSPFLPSDS EILLDSPEQE DIDEFFVDSI PGPPCSQSEE DKS
Arabidopsis Description
At2g46420/F11C10.11 [Source:UniProtKB/TrEMBL;Acc:Q9SKD8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.