Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0100g00590.t01 | Wine grape | nucleus | 50.41 | 28.37 |
| KXG31543 | Sorghum | nucleus | 79.34 | 26.52 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 76.03 | 25.7 |
| Zm00001d039349_P002 | Maize | nucleus | 76.03 | 25.34 |
| TraesCS3B01G171500.1 | Wheat | nucleus | 74.38 | 25.21 |
| TraesCS3A01G104000.1 | Wheat | unclear | 74.38 | 25.07 |
| TraesCS3A01G144700.2 | Wheat | nucleus | 74.38 | 24.79 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 74.38 | 24.79 |
| TraesCS3B01G122400.1 | Wheat | nucleus | 73.55 | 24.79 |
| Os03t0280400-01 | Rice | cytosol, nucleus, plastid | 15.7 | 24.36 |
| Zm00001d008954_P002 | Maize | nucleus | 78.51 | 24.05 |
| Os01t0837600-01 | Rice | cytosol, nucleus, plastid | 17.36 | 20.59 |
| Solyc01g010520.2.1 | Tomato | nucleus | 60.33 | 20.39 |
| PGSC0003DMT400024865 | Potato | nucleus | 60.33 | 19.78 |
| Os05t0212400-01 | Rice | cytosol, nucleus | 57.85 | 19.72 |
| GSMUA_Achr10P... | Banana | nucleus | 57.02 | 19.11 |
| KRH06484 | Soybean | nucleus | 56.2 | 18.73 |
| KRH47919 | Soybean | nucleus | 55.37 | 18.66 |
| GSMUA_Achr7P14110_001 | Banana | nucleus | 55.37 | 18.56 |
| KRG97168 | Soybean | nucleus | 54.55 | 18.44 |
| VIT_15s0046g00990.t01 | Wine grape | nucleus | 55.37 | 18.21 |
| CDY42046 | Canola | nucleus | 54.55 | 17.93 |
| AT3G61700.2 | Thale cress | nucleus | 53.72 | 17.86 |
| GSMUA_Achr6P14310_001 | Banana | nucleus | 54.55 | 17.84 |
| Os05t0462000-00 | Rice | cytosol | 14.88 | 17.65 |
| Bra003465.1-P | Field mustard | nucleus | 52.89 | 17.49 |
| CDX67857 | Canola | nucleus | 52.89 | 17.49 |
| AT2G46420.3 | Thale cress | nucleus | 52.07 | 17.36 |
| CDY25057 | Canola | nucleus | 51.24 | 17.08 |
| Bra004538.1-P | Field mustard | nucleus | 50.41 | 16.99 |
| CDX80017 | Canola | nucleus | 49.59 | 16.71 |
| GSMUA_Achr6P05700_001 | Banana | nucleus | 47.93 | 16.52 |
| Solyc05g007270.2.1 | Tomato | cytosol | 54.55 | 16.34 |
| CDX71711 | Canola | mitochondrion | 47.11 | 12.69 |
| Os02t0137100-01 | Rice | nucleus | 29.75 | 10.94 |
| CDY11376 | Canola | cytosol | 47.11 | 3.47 |
| Bra007627.1-P | Field mustard | cytosol | 47.11 | 3.47 |
Protein Annotations
| EnsemblPlants:Os01t0220200-01 | EnsemblPlantsGene:Os01g0220200 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF9 | PFAM:PF09713 |
| ProteinID:BAS71066.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0003938EC4 | UniProt:A0A0P0UZR1 | MapMan:35.2 | : |
Description
Similar to Uncharacterized plant-specific domain TIGR01589 family protein. (Os01t0220200-01)
Coordinates
chr1:-:6575127..6577148
Molecular Weight (calculated)
13260.4 Da
IEP (calculated)
4.514
GRAVY (calculated)
-0.622
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYVAMKDSQ DIQSPTELQS SAQGTNEVQS NQPNPMATDG PGGDSGSLSI ASNDNRKVSR EDIELVQNLI ERCLQLYMNK GEVVRTLSTR ARIEPGFTTL
101: GDVAKSVDDD INVLRVSYRT H
101: GDVAKSVDDD INVLRVSYRT H
001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP
Arabidopsis Description
Helicase with zinc finger protein [Source:UniProtKB/TrEMBL;Acc:A8MQR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.