Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G313700.1 | Wheat | nucleus | 96.72 | 96.72 |
| TraesCS7A01G413700.1 | Wheat | nucleus | 90.49 | 90.49 |
| EER90343 | Sorghum | nucleus | 65.25 | 69.1 |
| TraesCS6D01G093800.1 | Wheat | nucleus | 64.59 | 60.8 |
| GSMUA_Achr1P08340_001 | Banana | cytosol | 52.13 | 49.69 |
| GSMUA_Achr11P... | Banana | nucleus | 52.46 | 49.23 |
| GSMUA_Achr10P... | Banana | nucleus | 49.84 | 47.35 |
| AT3G10250.5 | Thale cress | mitochondrion, nucleus | 47.54 | 44.75 |
| PGSC0003DMT400076756 | Potato | nucleus | 44.92 | 43.91 |
| CDY56714 | Canola | mitochondrion, nucleus | 46.23 | 42.99 |
| Solyc10g079710.1.1 | Tomato | nucleus | 40.0 | 42.96 |
| CDY41330 | Canola | mitochondrion, nucleus | 45.9 | 42.81 |
| Bra029826.1-P | Field mustard | mitochondrion, nucleus | 45.9 | 42.55 |
| VIT_08s0007g05400.t01 | Wine grape | mitochondrion, nucleus | 45.25 | 42.46 |
| Bra034101.1-P | Field mustard | mitochondrion, nucleus | 45.25 | 42.46 |
| Solyc01g005640.2.1 | Tomato | nucleus | 41.64 | 42.19 |
| CDY08617 | Canola | mitochondrion, nucleus | 45.25 | 41.95 |
| KRH66806 | Soybean | nucleus | 45.9 | 41.79 |
| AT5G04090.6 | Thale cress | nucleus | 43.28 | 40.99 |
| KRG95131 | Soybean | nucleus | 45.25 | 40.71 |
| CDY00915 | Canola | mitochondrion, nucleus | 44.26 | 40.66 |
| PGSC0003DMT400076729 | Potato | nucleus | 41.31 | 40.38 |
| Solyc10g079590.1.1 | Tomato | nucleus | 41.97 | 40.25 |
| PGSC0003DMT400081823 | Potato | nucleus | 41.97 | 40.25 |
| TraesCS3D01G349400.1 | Wheat | cytosol, nucleus, plastid | 9.84 | 31.58 |
| TraesCS1D01G286100.1 | Wheat | cytosol | 9.18 | 28.57 |
| TraesCS3D01G106200.1 | Wheat | nucleus | 33.44 | 28.49 |
| TraesCS3D01G153500.1 | Wheat | cytosol | 33.44 | 28.1 |
| TraesCS4D01G203800.1 | Wheat | mitochondrion | 8.85 | 17.2 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G407000.1 | EnsemblPlantsGene:TraesCS7D01G407000 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF1 | PFAM:PF09713 |
| SEG:seg | TIGRFAMs:TIGR01589 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:524319741..524324369
Molecular Weight (calculated)
33196.4 Da
IEP (calculated)
4.254
GRAVY (calculated)
-0.450
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEDVRKVQ NLIERCLQLY MNQKEVIDTL SLEAKIEPSF TELVWQKLEE ENREFFKAYY LRLMLKNQIT AFNKLLEDQF QLMNKDYSSG IPSMPLTNGS
101: NSTTLKQNLC FLPESGPISA MPNGVMRNGS SGGLVNGTSS GDHSIYGGKD IHGPHSSMDA STNVLPAQNA SALLYGADNN GTTIKTESSY SSNADFAFCG
201: NAFLESCQSI GDASGGSFSS SDLNGQPLND ALLDMESSSF GFLSQIPRNF SFSDLTEGFN QNTEVLENYG RSPFLSSEPN NFSDSTGGEH TGNPFSSSLL
301: FQSQP
101: NSTTLKQNLC FLPESGPISA MPNGVMRNGS SGGLVNGTSS GDHSIYGGKD IHGPHSSMDA STNVLPAQNA SALLYGADNN GTTIKTESSY SSNADFAFCG
201: NAFLESCQSI GDASGGSFSS SDLNGQPLND ALLDMESSSF GFLSQIPRNF SFSDLTEGFN QNTEVLENYG RSPFLSSEPN NFSDSTGGEH TGNPFSSSLL
301: FQSQP
001: MSSGTVRRVS RQDIQLVQNL IERCLQLYMN QKEVVDTLLE QAKIEPGFTE LVWQKLEEEN REFFKAYYLR LMVKHQIMEF NKLLEQQVHH MRQMHPTGVA
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
101: SVQNTNGSHL QSMNQKQLCY PSEHTDQSLK SESAHHPMAS SLSNAFLNGS STLNTNVPSS INISTHARRV DASPNMLSSQ TTNMPMMQGM NGGMIKSETA
201: FTNPASFMYG GERNALEGHS AVGDTSIPNF SNESNNQPLS DPLLEAEAST FGFLGQIPRN FSLSDLTADF SQSSEILESY DRSPFLVPNA ENFLDSRDRG
301: EYQGDNKRLD TISEGFSYDN IGSE
Arabidopsis Description
AT3G10250 protein [Source:UniProtKB/TrEMBL;Acc:Q940M5]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.