Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53585 | Canola | cytosol | 59.49 | 88.68 |
| AT3G28990.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 75.95 | 68.18 |
| CDY02930 | Canola | nucleus | 69.62 | 57.89 |
| CDY40206 | Canola | nucleus | 68.35 | 56.84 |
| CDX73396 | Canola | nucleus | 68.35 | 56.84 |
| CDX76114 | Canola | nucleus | 68.35 | 56.84 |
| VIT_00s0317g00020.t01 | Wine grape | nucleus | 65.82 | 55.91 |
| CDY72004 | Canola | extracellular | 37.97 | 52.63 |
| KRG92960 | Soybean | nucleus | 64.56 | 52.04 |
| VIT_14s0036g00440.t01 | Wine grape | nucleus | 63.29 | 50.51 |
| CDY11219 | Canola | cytosol | 56.96 | 49.45 |
| CDX80829 | Canola | cytosol, nucleus, peroxisome | 56.96 | 49.45 |
| VIT_00s0317g00030.t01 | Wine grape | nucleus | 65.82 | 47.27 |
| PGSC0003DMT400060454 | Potato | cytosol | 58.23 | 44.23 |
| Solyc05g054750.2.1 | Tomato | cytosol | 49.37 | 43.33 |
| KRH36210 | Soybean | extracellular | 58.23 | 41.44 |
| CDY37956 | Canola | cytosol | 43.04 | 33.66 |
| CDX93395 | Canola | cytosol | 43.04 | 33.66 |
| CDY41330 | Canola | mitochondrion, nucleus | 35.44 | 8.56 |
| CDY56714 | Canola | mitochondrion, nucleus | 35.44 | 8.54 |
| CDY42046 | Canola | nucleus | 39.24 | 8.42 |
| CDX80017 | Canola | nucleus | 37.97 | 8.36 |
| CDY25057 | Canola | nucleus | 37.97 | 8.26 |
| CDY08617 | Canola | mitochondrion, nucleus | 34.18 | 8.21 |
| CDX67857 | Canola | nucleus | 37.97 | 8.2 |
| CDY00915 | Canola | mitochondrion, nucleus | 34.18 | 8.13 |
| CDX71711 | Canola | mitochondrion | 36.71 | 6.46 |
| CDY11376 | Canola | cytosol | 36.71 | 1.76 |
Protein Annotations
| EnsemblPlants:CDY20432 | EnsemblPlantsGene:GSBRNA2T00012502001 | InterPro:CHP01589_pln | PANTHER:PTHR31871 | PANTHER:PTHR31871:SF2 | PFAM:PF09713 |
| ProteinID:CDY20432 | ProteinID:CDY20432.1 | TIGRFAMs:TIGR01589 | UniParc:UPI0004EDB209 | UniProt:A0A078G654 | MapMan:35.2 |
Description
BnaC04g06120DBnaC04g06120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G654]
Coordinates
chrLK032108:-:24279..26458
Molecular Weight (calculated)
9211.0 Da
IEP (calculated)
4.818
GRAVY (calculated)
-0.566
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MGDSSPAAYI PMVQYMIEKC LIFNMSKEEC MKALSENANI NPVITSTVWK ELVKTNKEFF ETYERKHTKN ESMSEEDHL
1: MRHSSPAVYI HLVQHMIETC LTFNMSKEEC MEALSENANI NPIITSTVWK ELVKENKDFF ETYEQKLMKK ESMSEEETNQ LIQNIISL
Arabidopsis Description
Plant protein 1589 of unknown function [Source:TAIR;Acc:AT3G28990]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.