Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95053 | Canola | mitochondrion, plastid | 97.53 | 63.2 |
| CDX93556 | Canola | mitochondrion, plastid | 95.68 | 62.0 |
| AT1G08530.1 | Thale cress | plastid | 82.72 | 52.14 |
| Os12t0430900-00 | Rice | cytosol | 37.04 | 50.42 |
| VIT_04s0043g00870.t01 | Wine grape | plastid | 74.07 | 47.24 |
| KRH29303 | Soybean | plastid | 70.99 | 45.1 |
| Solyc04g051120.2.1 | Tomato | plastid | 71.6 | 42.34 |
| GSMUA_Achr4P16060_001 | Banana | plastid | 70.99 | 42.12 |
| PGSC0003DMT400059517 | Potato | plastid | 38.27 | 33.33 |
| TraesCS2D01G176900.1 | Wheat | mitochondrion, plastid | 41.36 | 30.32 |
| TraesCS2A01G169400.2 | Wheat | mitochondrion, plastid | 41.36 | 30.04 |
| TraesCS2B01G195700.2 | Wheat | mitochondrion, plastid | 31.48 | 26.7 |
| KXG23152 | Sorghum | plastid | 46.3 | 26.22 |
| Bra009067.1-P | Field mustard | plastid | 37.65 | 24.7 |
Protein Annotations
| EnsemblPlants:Bra018618.1 | EnsemblPlants:Bra018618.1-P | EnsemblPlantsGene:Bra018618 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009536 | GO:GO:0009941 | PANTHER:PTHR33825 | PANTHER:PTHR33825:SF11 | PFscan:PS51257 |
| TMHMM:TMhelix | UniParc:UPI000253E797 | UniProt:M4DQ27 | MapMan:35.2 | : | : |
Description
AT1G08530 (E=1e-070) | unknown protein
Coordinates
chrA06:+:2947791..2948970
Molecular Weight (calculated)
16961.4 Da
IEP (calculated)
5.669
GRAVY (calculated)
0.169
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSDQAFLL LAFIACTTSV AFTSFVLTAV PTLLAMGRAA SSFAKLADTA RQELPSTLAA IRLSGMEISD LTLELSELSH EVTEGVNKSA KAVQAAEAGI
101: RQIGTLAHQQ TLSMIDERAS LPEISLQPVV AGAAKRTSHA IGKASKTLMN IITGGDKDED SS
101: RQIGTLAHQQ TLSMIDERAS LPEISLQPVV AGAAKRTSHA IGKASKTLMN IITGGDKDED SS
001: MKSLCFISTA PLIRSPPFLD LSPTSLNRFT LKIPASLYVS HPTRCSISNP SSSEELLNSN GGMSRASISV FGGTSLNNLK MQVGSPISLH SINPLAKLSL
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED
Arabidopsis Description
Chitinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WNC2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.