Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018618.1-P | Field mustard | endoplasmic reticulum, extracellular | 62.0 | 95.68 |
| CDX95053 | Canola | mitochondrion, plastid | 78.4 | 78.4 |
| AT1G08530.1 | Thale cress | plastid | 55.2 | 53.7 |
| VIT_04s0043g00870.t01 | Wine grape | plastid | 51.2 | 50.39 |
| KRH29303 | Soybean | plastid | 50.8 | 49.8 |
| Os12t0430900-00 | Rice | cytosol | 23.6 | 49.58 |
| Solyc04g051120.2.1 | Tomato | plastid | 50.4 | 45.99 |
| GSMUA_Achr4P16060_001 | Banana | plastid | 50.0 | 45.79 |
| PGSC0003DMT400059517 | Potato | plastid | 28.8 | 38.71 |
| TraesCS2A01G169400.2 | Wheat | mitochondrion, plastid | 30.8 | 34.53 |
| TraesCS2D01G176900.1 | Wheat | mitochondrion, plastid | 30.4 | 34.39 |
| TraesCS2B01G195700.2 | Wheat | mitochondrion, plastid | 24.8 | 32.46 |
| KXG23152 | Sorghum | plastid | 33.6 | 29.37 |
| CDX69870 | Canola | plastid | 28.8 | 29.15 |
| CDY21621 | Canola | plastid | 28.8 | 29.15 |
Protein Annotations
| EnsemblPlants:CDX93556 | EnsemblPlantsGene:GSBRNA2T00156232001 | GO:A0A078DWB5 | PANTHER:PTHR33825 | PANTHER:PTHR33825:SF11 | ProteinID:CDX93556 |
| ProteinID:CDX93556.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF1C6A | MapMan:35.2 | : |
Description
BnaA06g04920D
Coordinates
chrLK031876:-:700825..702419
Molecular Weight (calculated)
26324.8 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.079
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSLRLISTA PLTPFLSLSR TRVIFKAPAK RCGGGFVTMS LDSNSEKSSS SSEGVSISVL EDQSINDFKM KLGSSVSPPR LINPLGKTMS RSDQAFLLLA
101: FIACTTSVAF TSFVLTAVPT LLAMGRAASS FAKLADTARQ ELPSTLAAIR LSGMEISDLT LELSELSHEV NEGVNKSAKA VQAAEAGIRQ IGTLAHHQTL
201: SMIDERASLP EISLQPVVAG AAKKTSHAIG KASKTLMNII TGGDKEEDAS
101: FIACTTSVAF TSFVLTAVPT LLAMGRAASS FAKLADTARQ ELPSTLAAIR LSGMEISDLT LELSELSHEV NEGVNKSAKA VQAAEAGIRQ IGTLAHHQTL
201: SMIDERASLP EISLQPVVAG AAKKTSHAIG KASKTLMNII TGGDKEEDAS
001: MKSLCFISTA PLIRSPPFLD LSPTSLNRFT LKIPASLYVS HPTRCSISNP SSSEELLNSN GGMSRASISV FGGTSLNNLK MQVGSPISLH SINPLAKLSL
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED
Arabidopsis Description
Chitinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WNC2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.