Factsheet for VIT_04s0043g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018618.1-P	Field mustard	endoplasmic reticulum, extracellular	47.24	74.07
KRH29303	Soybean	plastid	57.87	57.65
Solyc04g051120.2.1	Tomato	plastid	57.48	53.28
Os12t0430900-00	Rice	cytosol	24.8	52.94
AT1G08530.1	Thale cress	plastid	53.15	52.53
CDX93556	Canola	mitochondrion, plastid	50.39	51.2
GSMUA_Achr4P16060_001	Banana	plastid	54.72	50.92
CDX95053	Canola	mitochondrion, plastid	50.0	50.8
PGSC0003DMT400059517	Potato	plastid	33.07	45.16
TraesCS2A01G169400.2	Wheat	mitochondrion, plastid	30.71	34.98
TraesCS2D01G176900.1	Wheat	mitochondrion, plastid	30.32	34.84
KXG23152	Sorghum	plastid	35.04	31.12
TraesCS2B01G195700.2	Wheat	mitochondrion, plastid	22.83	30.37
VIT_07s0031g01500.t01	Wine grape	plastid	27.56	28.23

Protein Annotations

EntrezGene:100240963	wikigene:100240963	MapMan:35.2	ProteinID:CBI28673	ProteinID:CBI28673.3	UniProt:D7TDV0
EMBL:FN595763	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009536
GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100240963	wikigene:LOC100240963	PANTHER:PTHR33825
PANTHER:PTHR33825:SF11	TMHMM:TMhelix	UniParc:UPI0001BE32D5	ArrayExpress:VIT_04s0043g00870	EnsemblPlantsGene:VIT_04s0043g00870	EnsemblPlants:VIT_04s0043g00870.t01
unigene:Vvi.12150	RefSeq:XP_002265708	RefSeq:XP_002265708.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:15300633..15309621

Molecular Weight (calculated)

27296.5 Da

IEP (calculated)

4.907

GRAVY (calculated)

0.008

Length

254 amino acids

Sequence
(BLAST)

001: MNLFATPDIS FLPSSNFLRF ISSNPQILPS IRCFSHSSKP FSSLHHQEPL NPNFVHEEPP PDQWKVEVQS PLVPASAVPP AKLSLNDRAF FLLAFIACTT
101: SVAFTSLVIA AVPTLFAMGR AATSLAKLAD TAREELPSTM AAIRLSGMEI SDLTLELSDL SQEIADGVSK STQAVQAAEA GIRQIGTLAR QQTASMIQER
201: ASLPIISLQP VVTGAAKKTS RAVGQATKTI INMISGKDFS SDDEDDDEVN RLES

Best Arabidopsis Sequence Match ( AT1G08530.1 )
(BLAST)

001: MKSLCFISTA PLIRSPPFLD LSPTSLNRFT LKIPASLYVS HPTRCSISNP SSSEELLNSN GGMSRASISV FGGTSLNNLK MQVGSPISLH SINPLAKLSL
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED

Arabidopsis Description

Chitinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WNC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.