Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH53790 | Soybean | plastid | 56.85 | 59.0 |
| PGSC0003DMT400077375 | Potato | plastid | 56.05 | 56.5 |
| Solyc05g051770.2.1 | Tomato | plastid | 56.05 | 56.5 |
| Bra009067.1-P | Field mustard | plastid | 55.24 | 55.47 |
| CDX69870 | Canola | plastid | 54.84 | 55.06 |
| CDY21621 | Canola | plastid | 54.84 | 55.06 |
| AT5G09995.2 | Thale cress | plastid | 54.03 | 52.14 |
| GSMUA_Achr3P19990_001 | Banana | plastid | 42.74 | 49.77 |
| KRH64155 | Soybean | plastid | 28.23 | 46.36 |
| HORVU7Hr1G037780.9 | Barley | plastid | 28.23 | 29.79 |
| TraesCS7A01G184400.1 | Wheat | plastid | 27.42 | 29.06 |
| TraesCS7D01G185800.1 | Wheat | plastid | 27.42 | 28.57 |
| TraesCS7A01G184100.1 | Wheat | plastid | 27.42 | 28.22 |
| VIT_04s0043g00870.t01 | Wine grape | plastid | 28.23 | 27.56 |
| TraesCS7B01G089100.1 | Wheat | cytosol | 12.1 | 26.32 |
| Os06t0225400-02 | Rice | plastid | 25.4 | 25.71 |
| OQU87759 | Sorghum | plastid | 26.61 | 25.48 |
Protein Annotations
| EntrezGene:100256131 | wikigene:100256131 | MapMan:35.2 | UniProt:A5BRB5 | EMBL:AM468259 | ProteinID:CAN81396 |
| ProteinID:CAN81396.1 | ProteinID:CCB47115 | ProteinID:CCB47115.1 | ncoils:Coil | EMBL:FN595233 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100256131 | wikigene:LOC100256131 | PANTHER:PTHR33825 | PANTHER:PTHR33825:SF5 |
| TIGR:TC60427 | TMHMM:TMhelix | UniParc:UPI00015249FE | ArrayExpress:VIT_07s0031g01500 | EnsemblPlantsGene:VIT_07s0031g01500 | EnsemblPlants:VIT_07s0031g01500.t01 |
| unigene:Vvi.24676 | RefSeq:XP_002280199 | RefSeq:XP_002280199.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:+:17601266..17604251
Molecular Weight (calculated)
27067.7 Da
IEP (calculated)
10.999
GRAVY (calculated)
-0.058
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLRLQVS NPAIKPNDAH TLAGNLFSCR RLSGTGPPAR RFTCLSLKSN NAASPELQSF VSSQFTSSVG SSPSSLQLSQ WNLTHRHIEV LNVIALATAI
101: SATWLFCSAI PTLLAFKRAA ESLEKLLDVT REELPGTMAA VRLSGMEISD LTMELSDLGQ EITQGVRSST RAVRMAEERL RRLTNMTPSA TVQGLANQKI
201: EAADPLLART ARGIKEGIVK GRSFFQLFFT LTRLSKMAFN YFATRAKS
101: SATWLFCSAI PTLLAFKRAA ESLEKLLDVT REELPGTMAA VRLSGMEISD LTMELSDLGQ EITQGVRSST RAVRMAEERL RRLTNMTPSA TVQGLANQKI
201: EAADPLLART ARGIKEGIVK GRSFFQLFFT LTRLSKMAFN YFATRAKS
001: MLFSPSKLQS PQSLISWNPI LHNGFIDKNL SFRRRVTLRL ASPISRLTKG SDSIASSTPS ALYSNPQEPS ISSQLTSSVG QPPLQLSQWT FTQKHFVLLN
101: VVACVTAISA SWLFFAAIPT LLAFKKAAES LEKLLDVTRE ELPDTMAAVR LSGMEISDLT MELSDLGQGI TQGVKSSTRA IRVAEDRLRR LTNMNPVASM
201: QEVMRQTKTD ETEPMLAKQA RSFREGVVKG RSLWQLFSTI TRFSKITTSY LAKRAKQ
101: VVACVTAISA SWLFFAAIPT LLAFKKAAES LEKLLDVTRE ELPDTMAAVR LSGMEISDLT MELSDLGQGI TQGVKSSTRA IRVAEDRLRR LTNMNPVASM
201: QEVMRQTKTD ETEPMLAKQA RSFREGVVKG RSLWQLFSTI TRFSKITTSY LAKRAKQ
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Euk /.../s - 9610 (source: NCBI BLink). [Source:TAIR;Acc:AT5G09995]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.