Factsheet for Solyc04g051120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059517	Potato	plastid	66.06	97.31
Bra018618.1-P	Field mustard	endoplasmic reticulum, extracellular	42.34	71.6
VIT_04s0043g00870.t01	Wine grape	plastid	53.28	57.48
KRH29303	Soybean	plastid	53.28	57.25
Os12t0430900-00	Rice	cytosol	23.36	53.78
AT1G08530.1	Thale cress	plastid	49.63	52.92
CDX93556	Canola	mitochondrion, plastid	45.99	50.4
CDX95053	Canola	mitochondrion, plastid	45.99	50.4
GSMUA_Achr4P16060_001	Banana	plastid	48.18	48.35
TraesCS2A01G169400.2	Wheat	mitochondrion, plastid	32.12	39.46
TraesCS2D01G176900.1	Wheat	mitochondrion, plastid	31.75	39.37
TraesCS2B01G195700.2	Wheat	mitochondrion, plastid	25.55	36.65
KXG23152	Sorghum	plastid	32.48	31.12
Solyc05g051770.2.1	Tomato	plastid	24.82	27.64

Protein Annotations

EnsemblPlants:Solyc04g051120.2.1	EnsemblPlantsGene:Solyc04g051120.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009536	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR33825	PANTHER:PTHR33825:SF11
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002766F98	UniProt:K4BS74	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:+:49703389..49714750

Molecular Weight (calculated)

29067.8 Da

IEP (calculated)

8.216

GRAVY (calculated)

0.012

Length

274 amino acids

Sequence
(BLAST)

001: MKLGLITAYS RSSPTTVTLI SGNPHAKTAT LGVKFPSSFR LNSGYKISSF SLTICSSKSS SSVDSAGAGT ETYNQTVDGE ISSPQVTESL NIEVGSPKIL
101: PNYFPPKLSL SDQAFFLLTF IACTTSVAFT SLVVATVPTL FAMRRAAISL SKLADTAREE LPSTMAAIRL SGMEISDLTL ELSDLSQEIA DGVNKSARAV
201: QAAEAGIRQI GSRAHQQTMS MIQERADLPV ISLQPVVTGA AKKTSHAVTQ ATRRFMNMIS GGELGSEMED NGMR

Best Arabidopsis Sequence Match ( AT1G08530.1 )
(BLAST)

001: MKSLCFISTA PLIRSPPFLD LSPTSLNRFT LKIPASLYVS HPTRCSISNP SSSEELLNSN GGMSRASISV FGGTSLNNLK MQVGSPISLH SINPLAKLSL
101: SDQAFLLLAF IVCTTSVAFT SLVITAIPTL VAMGRAATSF AKLADTARKE LPSTLAAVRL SGMEISDLTL ELSDLSQDIT DGINKSAKAV QAAEAGIKQI
201: GTLAQQQTLS MIEERANLPE ISLQPVVAGA AEKTSHAIGS ATKRLMNIIT GGNKDED

Arabidopsis Description

Chitinase-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WNC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.