Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G351600.1 | Wheat | plastid | 41.5 | 94.07 |
| TraesCS1A01G348600.1 | Wheat | plastid | 41.18 | 93.33 |
| TraesCS1B01G363200.1 | Wheat | nucleus | 65.36 | 87.34 |
| AT2G46130.1 | Thale cress | nucleus | 25.49 | 71.56 |
| Zm00001d038761_P002 | Maize | nucleus | 39.87 | 55.96 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 32.35 | 55.0 |
| Zm00001d010805_P001 | Maize | nucleus | 40.85 | 54.59 |
| EES19853 | Sorghum | nucleus, plastid | 42.81 | 54.36 |
| KRH06569 | Soybean | nucleus | 31.7 | 49.74 |
| KRH40372 | Soybean | cytosol | 29.41 | 46.88 |
| VIT_15s0046g02150.t01 | Wine grape | nucleus, plastid | 30.72 | 46.77 |
| HORVU3Hr1G069660.1 | Barley | nucleus | 35.29 | 46.75 |
| AT5G41570.1 | Thale cress | nucleus | 27.12 | 46.37 |
| KRH00862 | Soybean | cytosol | 29.09 | 46.35 |
| Bra025490.1-P | Field mustard | nucleus | 26.14 | 45.98 |
| CDY44466 | Canola | nucleus | 26.14 | 45.45 |
| CDY39732 | Canola | nucleus | 26.14 | 45.45 |
| Bra027768.1-P | Field mustard | nucleus | 26.8 | 43.85 |
| CDY25554 | Canola | nucleus | 26.8 | 43.62 |
| CDY38208 | Canola | nucleus | 26.47 | 43.55 |
| Bra027675.1-P | Field mustard | nucleus | 26.8 | 43.39 |
| CDY34393 | Canola | nucleus | 26.8 | 43.16 |
| AT1G64000.1 | Thale cress | nucleus | 27.45 | 43.08 |
| CDY55479 | Canola | nucleus | 26.14 | 43.01 |
| PGSC0003DMT400032090 | Potato | nucleus | 30.07 | 40.35 |
| Solyc08g081630.1.1 | Tomato | nucleus | 29.74 | 39.39 |
| HORVU2Hr1G001780.1 | Barley | nucleus | 24.18 | 37.76 |
| HORVU2Hr1G093350.3 | Barley | nucleus | 21.57 | 28.7 |
| HORVU1Hr1G027700.1 | Barley | nucleus | 17.65 | 27.14 |
| HORVU6Hr1G061940.1 | Barley | nucleus | 18.95 | 25.55 |
| HORVU3Hr1G067510.1 | Barley | mitochondrion, plastid | 17.32 | 25.0 |
| HORVU0Hr1G001430.1 | Barley | plastid | 16.67 | 23.39 |
| HORVU3Hr1G021120.1 | Barley | nucleus, plastid | 19.28 | 22.35 |
| HORVU5Hr1G096420.20 | Barley | mitochondrion, nucleus | 21.24 | 21.52 |
| HORVU0Hr1G003340.1 | Barley | nucleus | 19.93 | 21.4 |
| HORVU3Hr1G020140.1 | Barley | mitochondrion | 16.67 | 20.73 |
| HORVU1Hr1G092130.1 | Barley | nucleus | 20.91 | 20.71 |
| HORVU3Hr1G050590.3 | Barley | nucleus | 17.97 | 20.68 |
| HORVU1Hr1G088300.1 | Barley | nucleus | 19.28 | 20.49 |
| HORVU1Hr1G080300.1 | Barley | nucleus | 17.97 | 19.71 |
| HORVU3Hr1G060500.1 | Barley | nucleus | 20.59 | 17.31 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:A0A287GH73 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | EnsemblPlantsGene:HORVU1Hr1G081570 | EnsemblPlants:HORVU1Hr1G081570.1 | InterPro:IPR003657 | InterPro:IPR036576 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF7 | SMART:SM00774 | SUPFAM:SSF118290 |
| UniParc:UPI000B4762EF | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr1H:-:527977231..527980247
Molecular Weight (calculated)
32856.8 Da
IEP (calculated)
10.090
GRAVY (calculated)
-0.558
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: KQLARSIGLP NSSHLPVSPS GHSYPQLQPT VRTSIYHAAP LHVTRCGHSP IHRALSLSGR RSSPSSGKQA RRWVSSVSSD PVMDNSQEGD DELFRHFQYL
101: QSPPLMEQQP QSSACDAAAD LGGQPGMPMP GLVDWASLLL PLGPGAAAGP TSQQQVVAGG VAGEEISMVN GRAAGAAAPE IGAGSSSGVG VGRDQETKGK
201: GGARGRGSRK ASRPRFAFQT KSENDVLDDG YRWRKYGQKA VKNSAFPRSY YRCTHHTCNV KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALNPILRQL
301: QFLSQL
101: QSPPLMEQQP QSSACDAAAD LGGQPGMPMP GLVDWASLLL PLGPGAAAGP TSQQQVVAGG VAGEEISMVN GRAAGAAAPE IGAGSSSGVG VGRDQETKGK
201: GGARGRGSRK ASRPRFAFQT KSENDVLDDG YRWRKYGQKA VKNSAFPRSY YRCTHHTCNV KKQVQRLAKD TSIVVTTYEG VHNHPCEKLM EALNPILRQL
301: QFLSQL
001: MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
Arabidopsis Description
WRKY56At1g64000 [Source:UniProtKB/TrEMBL;Acc:Q29PS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.