Factsheet for HORVU1Hr1G088300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G401800.1	Wheat	nucleus	89.93	65.08
Os05t0565900-00	Rice	nucleus	61.11	42.0
EES18690	Sorghum	nucleus	61.11	41.51
GSMUA_Achr3P31310_001	Banana	nucleus	32.29	40.61
Zm00001d039032_P001	Maize	nucleus	56.94	40.2
HORVU3Hr1G060500.1	Barley	nucleus	50.69	40.11
GSMUA_Achr6P22160_001	Banana	nucleus	36.81	30.2
HORVU0Hr1G003340.1	Barley	nucleus	29.86	30.18
HORVU2Hr1G001780.1	Barley	nucleus	20.49	30.1
HORVU5Hr1G096420.20	Barley	mitochondrion, nucleus	31.25	29.8
Solyc02g071130.2.1	Tomato	nucleus	32.64	29.65
GSMUA_Achr1P04770_001	Banana	nucleus	30.21	29.39
PGSC0003DMT400025113	Potato	nucleus	32.29	29.25
GSMUA_Achr7P25400_001	Banana	nucleus	32.99	29.14
GSMUA_Achr4P14990_001	Banana	nucleus	31.25	27.11
GSMUA_Achr4P02800_001	Banana	nucleus	30.9	27.05
HORVU1Hr1G092130.1	Barley	nucleus	28.12	26.21
HORVU2Hr1G093350.3	Barley	nucleus	20.14	25.22
HORVU3Hr1G069660.1	Barley	nucleus	19.79	24.68
HORVU6Hr1G061940.1	Barley	nucleus	18.4	23.35
HORVU1Hr1G027700.1	Barley	nucleus	15.97	23.12
HORVU0Hr1G001430.1	Barley	plastid	17.36	22.94
HORVU3Hr1G067510.1	Barley	mitochondrion, plastid	16.67	22.64
HORVU3Hr1G021120.1	Barley	nucleus, plastid	20.49	22.35
GSMUA_Achr4P07920_001	Banana	nucleus	34.38	20.33
HORVU3Hr1G050590.3	Barley	nucleus	18.4	19.92
HORVU3Hr1G020140.1	Barley	mitochondrion	16.67	19.51
HORVU1Hr1G081570.1	Barley	plastid	20.49	19.28
HORVU1Hr1G080300.1	Barley	nucleus	17.36	17.92

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	UniProt:A0A287GMI0	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:HORVU1Hr1G088300	EnsemblPlants:HORVU1Hr1G088300.1	InterPro:IPR003657	InterPro:IPR036576
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000B487834	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr1H:+:541485679..541488517

Molecular Weight (calculated)

30670.0 Da

IEP (calculated)

9.667

GRAVY (calculated)

-0.794

Length

288 amino acids

Sequence
(BLAST)

001: EAGLGGGGAV EDEAGKCKKE DGDGDGDDES KEAAAVGGGD GDADKTKKGA AKGKGAAKVK GEKRPRQARF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF
101: PRSYYRCTTQ KCPVKKRVER SYQDAAVVIT TYEGKHIHPI PATLRGANHL LAAHAHAHGG QGLIHPSMFR MPAPPGAAFR PGDALGSFLQ QQHAAMQHQQ
201: QVAAAGMAMR QANAMAGGHM QAPPADHRGL AGGTTGNNTH AISSSSSATD PLRMEHLMAQ DYGLLQDMLM PPSSFAHSDN SNNNHNRR

Best Arabidopsis Sequence Match ( AT1G29860.1 )
(BLAST)

001: MDDHVEHNYN TSLEEVHFKS LSDCLQSSLV MDYNSLEKVF KFSPYSSPFQ SVSPSVNNPY LNLTSNSPVV SSSSNEGEPK ENTNDKSDQM EDNEGDLHGV
101: GESSKQLTKQ GKKKGEKKER EVRVAFMTKS EIDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCNVKK RVERSFQDPS IVITTYEGKH NHPIPSTLRG
201: TVAAEHLLVH RGGGGSLLHS FPRHHQDFLM MKHSPANYQS VGSLSYEHGH GTSSYNFNNN QPVVDYGLLQ DIVPSMFSKN ES

Arabidopsis Description

WRKY71Probable WRKY transcription factor 71 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.