Factsheet for GSMUA_Achr4P07920_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06260_001	Banana	nucleus	10.88	51.46
GSMUA_Achr4P17890_001	Banana	nucleus	11.7	50.89
GSMUA_Achr7P06860_001	Banana	nucleus	11.7	48.72
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	9.03	46.81
GSMUA_Achr3P31310_001	Banana	nucleus	21.97	46.72
GSMUA_Achr7P00580_001	Banana	cytosol, nucleus, plastid	14.17	46.31
GSMUA_Achr6P34870_001	Banana	nucleus	13.96	45.95
GSMUA_Achr4P14990_001	Banana	nucleus	30.6	44.88
GSMUA_Achr9P07230_001	Banana	mitochondrion	10.47	44.35
GSMUA_Achr7P25400_001	Banana	nucleus	28.34	42.33
GSMUA_Achr6P27090_001	Banana	nucleus	25.46	41.33
GSMUA_Achr1P04770_001	Banana	nucleus	24.44	40.2
GSMUA_Achr9P06750_001	Banana	nucleus	24.23	40.0
Solyc02g071130.2.1	Tomato	nucleus	25.67	39.43
GSMUA_Achr4P02800_001	Banana	nucleus	26.28	38.91
PGSC0003DMT400025113	Potato	nucleus	25.26	38.68
GSMUA_AchrUn_...	Banana	nucleus	22.79	38.54
GSMUA_Achr9P29350_001	Banana	nucleus	12.32	37.74
GSMUA_Achr9P01400_001	Banana	nucleus	13.96	37.57
GSMUA_Achr6P22160_001	Banana	nucleus	26.49	36.75
GSMUA_AchrUn_...	Banana	nucleus	13.35	36.72
GSMUA_Achr4P08880_001	Banana	nucleus	11.91	35.15
HORVU1Hr1G088300.1	Barley	nucleus	20.33	34.38
GSMUA_Achr7P24780_001	Banana	nucleus	12.53	33.89
GSMUA_AchrUn_...	Banana	nucleus	20.74	33.55
TraesCS3A01G242500.1	Wheat	nucleus	25.05	33.42
Zm00001d043950_P001	Maize	nucleus	26.08	33.33
TraesCS3B01G270500.1	Wheat	nucleus	25.05	33.15
GSMUA_Achr6P06360_001	Banana	nucleus	12.53	33.15
TraesCS3D01G242500.1	Wheat	nucleus	24.85	33.06
HORVU3Hr1G060500.1	Barley	nucleus	24.64	32.97
EES03393	Sorghum	nucleus	27.72	32.93
GSMUA_Achr8P26240_001	Banana	nucleus	11.5	32.56
GSMUA_Achr7P23980_001	Banana	mitochondrion	10.88	31.36
GSMUA_Achr8P10740_001	Banana	nucleus	20.12	31.31
GSMUA_Achr4P23360_001	Banana	nucleus	16.43	30.53
TraesCS1A01G401800.1	Wheat	nucleus	24.85	30.4
EES18690	Sorghum	nucleus	26.08	29.95
Zm00001d011527_P001	Maize	nucleus	25.46	29.95
Os05t0565900-00	Rice	nucleus	25.26	29.36
Zm00001d039032_P001	Maize	nucleus	24.44	29.17
GSMUA_Achr6P22920_001	Banana	mitochondrion	12.32	26.43
GSMUA_Achr7P09680_001	Banana	nucleus	10.47	25.25
GSMUA_Achr7P13310_001	Banana	nucleus	12.32	25.21
GSMUA_Achr10P...	Banana	nucleus	12.53	22.18

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr4G07920_001	EnsemblPlants:GSMUA_Achr4P07920_001	EnsemblPlants:GSMUA_Achr4T07920_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0SM09	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF56	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI00029537BD	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G07920_001]

Coordinates

chr4:-:5881498..5892185

Molecular Weight (calculated)

52765.4 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.513

Length

487 amino acids

Sequence
(BLAST)

001: MSGYHEREHF RSLFHDELAA LFSQRPTDGA ACISGGPSGS DTGAIFPAVT FTDVPLGSMM DNDALPRVFG LSCSAPLDAL GPGGRTGSPE LMVDVGNGSG
101: SLTPTFGCGG RVTTVTTNSS TSSLSAEAAG EEDADRCKKE EQQEEEGDTS KKVKKPNKQG ERRQREPRFA FVTESEVDHL EDGYRWRKYG QKAVKNSPYP
201: RSYYRCTTQK CPVKKRVERS YQNSTIVITT YEGRHTHRCP ATVRGSTLLL PPPLMSTSFF QDLVMQQAHQ LNSTANQMLP LQQLEFSHYG LLQDMTNPSP
301: DVGTLIFPYP PLRTPRDGRP VDVVRISGDV VELGMGRGGA SAGGAARYMC GKDAELGVWL PLTGPQGGGA LRPHAPLPRQ RPPHRSFPPS SYQRIRKNVL
401: HLVWASASSD SHGSAVRGIL SNKFGHFGGP NTGPPGRLLV TELLTSPCAC YAISHMSPEM TCSDACRSLC TKTRIPPLQF GAPAEPE

Best Arabidopsis Sequence Match ( AT4G18170.1 )
(BLAST)

001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP

Arabidopsis Description

WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.