Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P06260_001 | Banana | nucleus | 37.4 | 86.41 |
| CDY72079 | Canola | nucleus | 32.77 | 70.27 |
| GSMUA_Achr4P17890_001 | Banana | nucleus | 30.25 | 64.29 |
| GSMUA_Achr7P06860_001 | Banana | nucleus | 29.41 | 59.83 |
| VIT_07s0031g01840.t01 | Wine grape | nucleus | 50.42 | 53.1 |
| KRH64133 | Soybean | nucleus | 47.48 | 48.29 |
| KRH53810 | Soybean | nucleus | 47.48 | 47.88 |
| KRH43340 | Soybean | nucleus | 46.64 | 47.23 |
| PGSC0003DMT400050745 | Potato | nucleus | 46.22 | 47.01 |
| Solyc04g051540.2.1 | Tomato | nucleus | 46.22 | 47.01 |
| GSMUA_Achr3P20450_001 | Banana | cytosol, nucleus, plastid | 18.49 | 46.81 |
| KRH59476 | Soybean | nucleus | 42.44 | 46.76 |
| GSMUA_Achr10P... | Banana | nucleus | 49.58 | 42.91 |
| TraesCS3A01G116200.1 | Wheat | plastid | 47.06 | 42.75 |
| TraesCS3D01G118100.1 | Wheat | nucleus, plastid | 46.64 | 42.37 |
| TraesCS3B01G135300.1 | Wheat | nucleus, plastid | 47.06 | 42.26 |
| Os01t0182700-01 | Rice | nucleus | 48.74 | 41.43 |
| HORVU3Hr1G021120.1 | Barley | nucleus, plastid | 45.8 | 41.29 |
| GSMUA_Achr9P07230_001 | Banana | mitochondrion | 19.33 | 40.0 |
| Zm00001d039584_P001 | Maize | nucleus | 48.74 | 39.59 |
| OQU86187 | Sorghum | mitochondrion, nucleus | 47.9 | 38.64 |
| CDY41978 | Canola | nucleus | 44.54 | 35.57 |
| Bra011861.1-P | Field mustard | nucleus | 44.54 | 35.57 |
| CDY53184 | Canola | nucleus | 43.7 | 35.49 |
| CDX72701 | Canola | nucleus | 42.02 | 35.46 |
| Bra033616.1-P | Field mustard | nucleus | 43.28 | 35.27 |
| AT4G39410.1 | Thale cress | nucleus | 44.96 | 35.2 |
| Bra010683.1-P | Field mustard | nucleus | 43.7 | 35.14 |
| CDY12144 | Canola | nucleus | 42.44 | 34.24 |
| GSMUA_Achr7P00580_001 | Banana | cytosol, nucleus, plastid | 19.75 | 31.54 |
| GSMUA_Achr6P34870_001 | Banana | nucleus | 19.33 | 31.08 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 23.11 | 30.56 |
| GSMUA_Achr9P29350_001 | Banana | nucleus | 20.17 | 30.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.43 | 28.81 |
| GSMUA_Achr6P06360_001 | Banana | nucleus | 21.85 | 28.26 |
| GSMUA_Achr7P23980_001 | Banana | mitochondrion | 19.75 | 27.81 |
| GSMUA_Achr9P01400_001 | Banana | nucleus | 21.01 | 27.62 |
| GSMUA_Achr3P31310_001 | Banana | nucleus | 26.47 | 27.51 |
| GSMUA_Achr4P08880_001 | Banana | nucleus | 18.49 | 26.67 |
| GSMUA_Achr8P26240_001 | Banana | nucleus | 18.07 | 25.0 |
| GSMUA_Achr7P09680_001 | Banana | nucleus | 20.17 | 23.76 |
| GSMUA_Achr6P22920_001 | Banana | mitochondrion | 22.27 | 23.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.05 | 21.53 |
| GSMUA_Achr6P27090_001 | Banana | nucleus | 26.89 | 21.33 |
| GSMUA_Achr1P04770_001 | Banana | nucleus | 26.47 | 21.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.89 | 21.26 |
| GSMUA_Achr4P23360_001 | Banana | nucleus | 22.27 | 20.23 |
| GSMUA_Achr7P25400_001 | Banana | nucleus | 26.89 | 19.63 |
| GSMUA_Achr8P10740_001 | Banana | nucleus | 25.63 | 19.49 |
| GSMUA_Achr4P02800_001 | Banana | nucleus | 26.05 | 18.84 |
| GSMUA_Achr4P14990_001 | Banana | nucleus | 26.05 | 18.67 |
| GSMUA_Achr6P22160_001 | Banana | nucleus | 27.31 | 18.52 |
| GSMUA_Achr9P06750_001 | Banana | nucleus | 22.27 | 17.97 |
| GSMUA_Achr4P07920_001 | Banana | nucleus | 25.21 | 12.32 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSMUA_Achr7G13310_001 | EnsemblPlants:GSMUA_Achr7P13310_001 | EnsemblPlants:GSMUA_Achr7T13310_001 | InterPro:IPR003657 | InterPro:IPR036576 |
| UniProt:M0TH68 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF47 | SMART:SM00774 |
| SUPFAM:SSF118290 | UniParc:UPI000296150B | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G13310_001]
Coordinates
chr7:-:10718851..10722450
Molecular Weight (calculated)
26573.4 Da
IEP (calculated)
9.686
GRAVY (calculated)
-0.782
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSTSKGVM NQGLVENPEI MATSHMGFNL QASHLPPLTF SPYSLSKTCT VGGEDAVSRL RGNLPSLPPD HGDDGSGRLG QSPTQRSSSD LWSRTGDRAA
101: SDKGSSVAAG EYYSNNKNGP AANNIIIDGL SVGAMRMKKV KVRRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ ENCRVKKRIE
201: RMAEDPRMVI TTYEGRHVHS PSHAEEESQP SSEVTLFW
101: SDKGSSVAAG EYYSNNKNGP AANNIIIDGL SVGAMRMKKV KVRRKVREPR FCFKTMSEVD VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ ENCRVKKRIE
201: RMAEDPRMVI TTYEGRHVHS PSHAEEESQP SSEVTLFW
001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW
Arabidopsis Description
WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.