Factsheet for GSMUA_Achr6P06360_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07230_001	Banana	mitochondrion	46.2	73.91
GSMUA_Achr9P29350_001	Banana	nucleus	57.07	66.04
GSMUA_Achr9P01400_001	Banana	nucleus	59.24	60.22
GSMUA_AchrUn_...	Banana	nucleus	57.61	59.89
PGSC0003DMT400052057	Potato	nucleus	45.65	59.57
Solyc02g094270.1.1	Tomato	nucleus	41.3	58.02
VIT_17s0000g01280.t01	Wine grape	nucleus	45.65	55.63
KRH41119	Soybean	nucleus	39.67	49.66
HORVU2Hr1G001780.1	Barley	nucleus	52.72	49.49
GSMUA_Achr4P17890_001	Banana	nucleus	29.89	49.11
TraesCS2A01G011000.1	Wheat	nucleus	53.26	47.8
GSMUA_Achr5P06260_001	Banana	nucleus	26.63	47.57
TraesCS2D01G011700.1	Wheat	nucleus	53.26	47.57
TraesCS2B01G010500.1	Wheat	nucleus	52.72	47.32
GSMUA_Achr7P06860_001	Banana	nucleus	29.89	47.01
Zm00001d007329_P001	Maize	nucleus	53.8	45.0
EES08501	Sorghum	nucleus	53.26	43.56
Zm00001d049173_P001	Maize	nucleus	53.8	43.23
KRH54160	Soybean	nucleus	35.33	40.62
Os11t0490900-01	Rice	nucleus	53.26	40.5
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	20.65	40.43
GSMUA_Achr7P24780_001	Banana	nucleus	37.5	38.33
GSMUA_Achr6P22920_001	Banana	mitochondrion	38.59	31.28
GSMUA_Achr6P34870_001	Banana	nucleus	25.0	31.08
GSMUA_Achr7P00580_001	Banana	cytosol, nucleus, plastid	25.0	30.87
GSMUA_Achr4P08880_001	Banana	nucleus	23.91	26.67
GSMUA_Achr8P26240_001	Banana	nucleus	24.46	26.16
GSMUA_Achr7P23980_001	Banana	mitochondrion	23.91	26.04
GSMUA_Achr3P31310_001	Banana	nucleus	30.98	24.89
GSMUA_Achr7P13310_001	Banana	nucleus	28.26	21.85
GSMUA_Achr4P23360_001	Banana	nucleus	30.98	21.76
GSMUA_Achr7P09680_001	Banana	nucleus	22.83	20.79
GSMUA_Achr6P27090_001	Banana	nucleus	33.7	20.67
GSMUA_AchrUn_...	Banana	nucleus	33.7	20.6
GSMUA_Achr1P04770_001	Banana	nucleus	32.61	20.27
GSMUA_AchrUn_...	Banana	nucleus	31.52	20.14
GSMUA_Achr10P...	Banana	nucleus	29.89	20.0
GSMUA_Achr8P10740_001	Banana	nucleus	32.61	19.17
GSMUA_Achr7P25400_001	Banana	nucleus	32.07	18.1
GSMUA_Achr4P14990_001	Banana	nucleus	32.61	18.07
GSMUA_Achr4P02800_001	Banana	nucleus	31.52	17.63
GSMUA_Achr6P22160_001	Banana	nucleus	32.61	17.09
GSMUA_Achr9P06750_001	Banana	nucleus	25.54	15.93
GSMUA_Achr4P07920_001	Banana	nucleus	33.15	12.53

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G06360_001	EnsemblPlants:GSMUA_Achr6P06360_001	EnsemblPlants:GSMUA_Achr6T06360_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0T4N4	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000294B581	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G06360_001]

Coordinates

chr6:-:4286100..4287733

Molecular Weight (calculated)

21152.9 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.897

Length

184 amino acids

Sequence
(BLAST)

001: MENYPLRFPS QQPSGSFSTP CLSLLPADMI GDIQVFDTLQ GGNSAGFLRS KDVVEVPTSQ GYGAYQLMES FAGSRENEEK PSKKKEKKVR KPRYAFQTRS
101: HVDVLDDGYR WRKYGQKAVK NNRFPRSYYK CTHQGCSVKK QVQRLSRDEG IVVTTYEGVH THPTEKPHDN FQDILNQMQI YSNF

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.