Factsheet for VIT_17s0000g01280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41119	Soybean	nucleus	60.93	62.59
Solyc02g094270.1.1	Tomato	nucleus	50.33	58.02
PGSC0003DMT400052057	Potato	nucleus	51.66	55.32
VIT_14s0068g01770.t01	Wine grape	nucleus	62.25	51.65
GSMUA_Achr9P29350_001	Banana	nucleus	53.64	50.94
GSMUA_Achr9P01400_001	Banana	nucleus	58.28	48.62
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	58.94	47.09
HORVU2Hr1G001780.1	Barley	nucleus	59.6	45.92
GSMUA_AchrUn_...	Banana	nucleus	53.64	45.76
GSMUA_Achr6P06360_001	Banana	nucleus	55.63	45.65
KRH54160	Soybean	nucleus	47.02	44.38
TraesCS2A01G011000.1	Wheat	nucleus	58.94	43.41
TraesCS2B01G010500.1	Wheat	nucleus	58.94	43.41
TraesCS2D01G011700.1	Wheat	nucleus	57.62	42.23
VIT_04s0069g00980.t01	Wine grape	nucleus	27.15	40.59
Zm00001d007329_P001	Maize	nucleus	56.95	39.09
Zm00001d049173_P001	Maize	nucleus	58.94	38.86
EES08501	Sorghum	nucleus	55.63	37.33
Os11t0490900-01	Rice	nucleus	58.28	36.36
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	45.7	34.33
VIT_04s0008g01470.t01	Wine grape	nucleus	32.45	29.52
VIT_04s0069g00970.t01	Wine grape	nucleus	27.15	26.28
VIT_07s0031g01710.t01	Wine grape	nucleus	31.13	26.11
VIT_07s0031g01840.t01	Wine grape	nucleus	36.42	24.34
VIT_07s0005g01710.t01	Wine grape	nucleus	43.05	21.52
VIT_05s0077g00730.t01	Wine grape	nucleus	43.71	21.36
VIT_01s0011g00720.t01	Wine grape	nucleus	40.4	20.0
VIT_10s0003g02810.t01	Wine grape	nucleus	40.4	19.12
VIT_12s0028g00270.t01	Wine grape	nucleus	39.07	18.97

Protein Annotations

EntrezGene:100232957	wikigene:100232957	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:AAT90397	ProteinID:AAT90397.1
EMBL:AY585679	ProteinID:CBI15677	ProteinID:CBI15677.3	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100232957
wikigene:LOC100232957	RefSeq:NP_001268218.1	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF85
UniProt:Q5IZC7	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC54050	UniParc:UPI000049F5AF	ArrayExpress:VIT_17s0000g01280
EnsemblPlantsGene:VIT_17s0000g01280	EnsemblPlants:VIT_17s0000g01280.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

WRKY-type DNA binding protein 1 [Source:UniProtKB/TrEMBL;Acc:Q5IZC7]

Coordinates

chr17:-:922644..925087

Molecular Weight (calculated)

17714.1 Da

IEP (calculated)

10.195

GRAVY (calculated)

-1.043

Length

151 amino acids

Sequence
(BLAST)

001: MEGHQILFPG SSKSPANPFP PNMANFHAMN IYKSAGFDAS ETKEKPGKKE GQKKIRKHRF AFQTRSHVDI LDDGYRWRKY GQKAVKNNKF PRSYYRCTYK
101: DCNVKKQVQR LSKDEEIVVT TYEGIHTHPV EKPTENFEHI LRQMQSYFPI S

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.