Factsheet for VIT_01s0010g03930.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13080.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07230_001	Banana	mitochondrion	43.39	71.3
PGSC0003DMT400056352	Potato	nucleus	58.73	64.53
Solyc05g015850.2.1	Tomato	nucleus	58.73	64.53
AT5G13080.1	Thale cress	nucleus, plastid	47.09	61.38
Bra006178.1-P	Field mustard	nucleus	47.09	60.54
Bra008858.1-P	Field mustard	nucleus	47.09	60.54
CDX69672	Canola	nucleus	47.09	60.54
CDX70492	Canola	nucleus	47.09	60.54
CDX78504	Canola	nucleus	47.09	60.54
CDX97223	Canola	nucleus	46.03	59.18
VIT_17s0000g01280.t01	Wine grape	nucleus	47.09	58.94
KRG94564	Soybean	nucleus	55.56	55.85
VIT_14s0068g01770.t01	Wine grape	nucleus	53.44	55.49
VIT_04s0069g00980.t01	Wine grape	nucleus	22.22	41.58
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	40.74	38.31
VIT_04s0008g01470.t01	Wine grape	nucleus	26.45	30.12
VIT_07s0031g01710.t01	Wine grape	nucleus	28.04	29.44
VIT_04s0069g00970.t01	Wine grape	nucleus	21.16	25.64
VIT_07s0031g01840.t01	Wine grape	nucleus	28.57	23.89
VIT_07s0005g01710.t01	Wine grape	nucleus	37.04	23.18
VIT_01s0011g00720.t01	Wine grape	nucleus	35.45	21.97
VIT_10s0003g02810.t01	Wine grape	nucleus	36.51	21.63
VIT_05s0077g00730.t01	Wine grape	nucleus	34.92	21.36
VIT_12s0028g00270.t01	Wine grape	nucleus	33.33	20.26

Protein Annotations

EntrezGene:100254080	wikigene:100254080	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI27681	ProteinID:CBI27681.3
UniProt:D7TB08	EMBL:FN595754	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100254080	wikigene:LOC100254080	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC68615
UniParc:UPI00015CCDE0	ArrayExpress:VIT_01s0010g03930	EnsemblPlantsGene:VIT_01s0010g03930	EnsemblPlants:VIT_01s0010g03930.t01	unigene:Vvi.14004	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002275576	RefSeq:XP_002275576.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:21460152..21461423

Molecular Weight (calculated)

21260.0 Da

IEP (calculated)

9.360

GRAVY (calculated)

-0.723

Length

189 amino acids

Sequence
(BLAST)

001: MDSFSTLFPC PPSTSSPSPF SFLSMVNNSS HHDFQTHKPS DFLGLMSGTT ATAASMEVPA SDITNVDSLQ AKGLLGSDDG EVKSCGKKKG EKKIRKPRYA
101: FQTRSQVDIL DDGYRWRKYG QKAVKNNRFP RSYYRCTHQG CNVKKQVQRL SKDEGIVVTT YEGMHSHQIE KSTDNFEHIL SQMQVYASF

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.