Factsheet for Solyc05g015850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g119410.1.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13080.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT5G13080.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT5G13080.1	Solyc03g119410.1.1	AT3G18360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056352	Potato	nucleus	97.67	97.67
AT5G13080.1	Thale cress	nucleus, plastid	59.3	70.34
Bra008858.1-P	Field mustard	nucleus	59.3	69.39
CDX69672	Canola	nucleus	59.3	69.39
CDX97223	Canola	nucleus	58.14	68.03
GSMUA_Achr9P07230_001	Banana	mitochondrion	45.35	67.83
Bra006178.1-P	Field mustard	nucleus	56.98	66.67
CDX70492	Canola	nucleus	56.98	66.67
CDX78504	Canola	nucleus	56.98	66.67
Solyc02g094270.1.1	Tomato	nucleus	48.26	63.36
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	64.53	58.73
VIT_14s0068g01770.t01	Wine grape	nucleus	60.47	57.14
KRG94564	Soybean	nucleus	57.56	52.66
Solyc04g051690.2.1	Tomato	nucleus	29.07	28.74
Solyc08g081630.1.1	Tomato	nucleus	38.37	28.57
Solyc08g062490.2.1	Tomato	nucleus	27.91	26.52
Solyc01g089960.2.1	Tomato	nucleus	34.88	25.42
Solyc04g051540.2.1	Tomato	nucleus	29.07	21.37
Solyc12g056750.1.1	Tomato	nucleus	22.09	20.21
Solyc01g079260.2.1	Tomato	nucleus	36.63	19.69
Solyc05g053380.2.1	Tomato	nucleus	33.72	19.66
Solyc02g071130.2.1	Tomato	nucleus	36.05	19.56
Solyc04g072070.2.1	Tomato	nucleus	25.58	19.3
Solyc07g056280.2.1	Tomato	nucleus	35.47	18.94
Solyc12g011200.1.1	Tomato	nucleus	36.63	18.81
Solyc05g012500.2.1	Tomato	nucleus	35.47	18.65
Solyc01g058540.2.1	Tomato	nucleus	32.56	17.28

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4BYV1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF25	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc05g015850.2	EnsemblPlants:Solyc05g015850.2.1
UniParc:UPI0002766C70	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:12420457..12423158

Molecular Weight (calculated)

19879.6 Da

IEP (calculated)

9.726

GRAVY (calculated)

-0.851

Length

172 amino acids

Sequence
(BLAST)

001: MENYATIFPS ASSSSSHHDG YVSLMNSKSS ISDDTKEELL FQGKNKAGFL GLMASMETPR DIITKKDEVI KSCKKKIKKP RYAFQTRSQV DILDDGYRWR
101: KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLSKDEEVV VTTYEGMHSH PIDKSTDNFE HILSQMQIYN SF

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.