Factsheet for Solyc01g079260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023368	Potato	nucleus	85.94	86.75
Solyc02g094270.1.1	Tomato	nucleus	19.06	46.56
KRH68280	Soybean	nucleus	38.12	42.51
KRG96545	Soybean	nucleus	38.44	42.41
VIT_07s0005g01710.t01	Wine grape	nucleus	36.88	39.07
KRH69197	Soybean	nucleus	37.81	37.81
KRH31775	Soybean	nucleus	37.81	37.46
Solyc05g015850.2.1	Tomato	nucleus	19.69	36.63
CDY37794	Canola	nucleus	35.31	36.1
CDX80094	Canola	nucleus	35.62	36.08
Bra004466.1-P	Field mustard	nucleus	35.94	36.05
AT2G47260.1	Thale cress	nucleus	36.25	34.42
AT3G62340.1	Thale cress	nucleus	29.38	33.94
Solyc05g053380.2.1	Tomato	nucleus	30.31	32.88
Solyc07g056280.2.1	Tomato	nucleus	32.19	31.99
Solyc04g051690.2.1	Tomato	nucleus	17.19	31.61
Bra021393.1-P	Field mustard	nucleus	31.56	31.27
CDY51420	Canola	nucleus	31.56	31.17
CDY27500	Canola	nucleus	32.19	30.93
CDX76630	Canola	nucleus	28.12	30.3
Bra007674.1-P	Field mustard	nucleus	28.12	30.2
CDY11416	Canola	nucleus	28.12	30.2
Solyc04g051540.2.1	Tomato	nucleus	21.88	29.91
Solyc02g071130.2.1	Tomato	nucleus	29.06	29.34
Solyc08g062490.2.1	Tomato	nucleus	16.56	29.28
Solyc12g011200.1.1	Tomato	nucleus	29.38	28.06
Solyc08g081630.1.1	Tomato	nucleus	19.69	27.27
Solyc01g058540.2.1	Tomato	nucleus	27.5	27.16
Solyc01g089960.2.1	Tomato	nucleus	19.69	26.69
Solyc05g012500.2.1	Tomato	nucleus	26.56	25.99
Solyc12g056750.1.1	Tomato	nucleus	14.38	24.47
Solyc04g072070.2.1	Tomato	nucleus	15.31	21.49

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4AXH1	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc01g079260.2	EnsemblPlants:Solyc01g079260.2.1
UniParc:UPI0002761B3E	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:78355436..78357892

Molecular Weight (calculated)

36117.1 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.754

Length

320 amino acids

Sequence
(BLAST)

001: MESYKDIKME DHHPMYFIDN NGFGVTNNHS FISDYSINPS SLGFMELLGF HQDFCSVFEL PKEENHYPAV CVSEEELKPP SSSSVAAAEK QKSSTTTVVA
101: TGNVLNTPST PNCSSISSEG HGDADGEVEN HDQKNTNAKQ QLKAKKTVSQ KKQKEPRFAF MTKSEVDFLE DGYRWRKYGQ KAVKNSPFPR NYYRCTNATC
201: NVKKRVERCF SDPSIVVTTY EGKHTHPSPM NTMISRPNCY PINPVLPSLG TYTLPMQFNA NQSFNDNLTS SNLAINHQLD HAAFVAQGRR FCSTNEILED
301: QENDLQNLMP SAVLKHDYNR

Best Arabidopsis Sequence Match ( AT2G47260.1 )
(BLAST)

001: MEFTDFSKTS FYYPSSQSVW DFGDLAAAER HSLGFMELLS SQQHQDFATV SPHSFLLQTS QPQTQTQPSA KLSSSIIQAP PSEQLVTSKV ESLCSDHLLI
101: NPPATPNSSS ISSASSEALN EEKPKTEDNE EEGGEDQQEK SHTKKQLKAK KNNQKRQREA RVAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT
201: TASCNVKKRV ERSFRDPSTV VTTYEGQHTH ISPLTSRPIS TGGFFGSSGA ASSLGNGCFG FPIDGSTLIS PQFQQLVQYH HQQQQQELMS CFGGVNEYLN
301: SHANEYGDDN RVKKSRVLVK DNGLLQDVVP SHMLKEE

Arabidopsis Description

WRKY23Probable WRKY transcription factor 23 [Source:UniProtKB/Swiss-Prot;Acc:O22900]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.