Factsheet for Solyc01g058540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029812	Potato	nucleus	81.17	77.58
Solyc02g094270.1.1	Tomato	nucleus	16.67	41.22
Solyc05g053380.2.1	Tomato	nucleus	35.8	39.32
Solyc05g015850.2.1	Tomato	nucleus	17.28	32.56
Solyc07g056280.2.1	Tomato	nucleus	29.63	29.81
Solyc04g051690.2.1	Tomato	nucleus	15.74	29.31
Solyc02g071130.2.1	Tomato	nucleus	28.4	29.02
Solyc05g012500.2.1	Tomato	nucleus	28.09	27.83
Solyc08g062490.2.1	Tomato	nucleus	15.43	27.62
Solyc01g089960.2.1	Tomato	nucleus	20.06	27.54
Solyc01g079260.2.1	Tomato	nucleus	27.16	27.5
Solyc04g051540.2.1	Tomato	nucleus	19.75	27.35
Solyc12g011200.1.1	Tomato	nucleus	26.85	25.97
Solyc12g056750.1.1	Tomato	nucleus	14.81	25.53
Solyc08g081630.1.1	Tomato	nucleus	17.59	24.68
Solyc04g072070.2.1	Tomato	nucleus	15.74	22.37

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4AW62	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc01g058540.2
EnsemblPlants:Solyc01g058540.2.1	UniParc:UPI000276211B	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:66817221..66818754

Molecular Weight (calculated)

35487.6 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.480

Length

324 amino acids

Sequence
(BLAST)

001: MSAFFPDESS SFFFDFPLYE TENVSSSPMR LIESMFTSPD DPITDSSSLF DLLQPPPFPP PPPPPPPPPP PPPADVPLLN PSPIANTSAN SSELSSSSTD
101: VAANDDFLQM IEMVEEQLEN DEDKIEDNIQ LIPKKKKARK ERAPRFAFMT KTEIDHLDDG FRWRKYGQKA VKNSPFPRSY FRCTIATCGV KKRVERSSAD
201: PSTVITTYEG VHTHPCPITP RSSIGFYRDT IDYSGGGSIG VGVGVGLGGV ASSSSLFLPE FNYQAQQQQP STYFQAPALP PINSFTTNSA QGGMLLPSTS
301: SSFGRDDGLL QDMVISQMMP KPNQ

Best Arabidopsis Sequence Match ( AT5G49520.1 )
(BLAST)

001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK

Arabidopsis Description

WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.