Factsheet for Solyc05g053380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069966	Potato	nucleus	78.64	92.8
Solyc02g094270.1.1	Tomato	nucleus	18.98	42.75
Solyc01g058540.2.1	Tomato	nucleus	39.32	35.8
Solyc05g015850.2.1	Tomato	nucleus	19.66	33.72
Solyc02g071130.2.1	Tomato	nucleus	34.92	32.49
Solyc04g051690.2.1	Tomato	nucleus	18.98	32.18
Solyc07g056280.2.1	Tomato	nucleus	34.92	31.99
Solyc01g079260.2.1	Tomato	nucleus	32.88	30.31
Solyc08g062490.2.1	Tomato	nucleus	18.31	29.83
Solyc05g012500.2.1	Tomato	nucleus	31.53	28.44
Solyc12g011200.1.1	Tomato	nucleus	31.53	27.76
Solyc04g051540.2.1	Tomato	nucleus	21.69	27.35
Solyc01g089960.2.1	Tomato	nucleus	21.69	27.12
Solyc12g056750.1.1	Tomato	nucleus	16.61	26.06
Solyc08g081630.1.1	Tomato	nucleus	20.34	25.97
Solyc04g072070.2.1	Tomato	nucleus	16.95	21.93

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4C218	PFAM:PF03106	PFscan:PS50811
PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc05g053380.2	EnsemblPlants:Solyc05g053380.2.1
UniParc:UPI0002766305	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:-:63484703..63487324

Molecular Weight (calculated)

33385.9 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.767

Length

295 amino acids

Sequence
(BLAST)

001: MEKENNVRTE ITNTSNWSSN AMFDIEKDYS LSFLLETMFG VDEHRNYCYD NTTTSSIFDL LMIPSHQQQL QPQRFITCSS LPESSSILLS DHLINNVPVT
101: PNSSSISSSS TELAANDDHQ HKYKKQLKPN KKKQKGEKEP RFAFMTKSEI DHLDDGFRWR KYGQKAVKNS PFPRSYYRCT TSSCGVKKRV ERSIQDTSIV
201: ITTYEGVHTH PCPITPRGWV GVQPVTTTYG GRVGGGDGGG RCCHYGDYSS SLFSTNNSLQ EKRFWSSSNS SLAKDDHGLL QDMVSSRMRS DLIEE

Best Arabidopsis Sequence Match ( AT5G49520.1 )
(BLAST)

001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK

Arabidopsis Description

WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.