Factsheet for PGSC0003DMT400069966

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g053380.2.1	Tomato	nucleus	92.8	78.64
PGSC0003DMT400052057	Potato	nucleus	22.4	39.72
PGSC0003DMT400083306	Potato	nucleus	15.6	38.24
PGSC0003DMT400029812	Potato	nucleus	46.4	34.22
PGSC0003DMT400080128	Potato	extracellular	18.8	34.06
PGSC0003DMT400056352	Potato	nucleus	22.4	32.56
PGSC0003DMT400025113	Potato	nucleus	39.6	31.13
PGSC0003DMT400023368	Potato	nucleus	39.2	30.91
PGSC0003DMT400044721	Potato	nucleus	39.2	30.72
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	36.4	27.91
PGSC0003DMT400050745	Potato	nucleus	25.2	26.92
PGSC0003DMT400032090	Potato	nucleus	24.4	26.75
PGSC0003DMT400020102	Potato	nucleus	34.8	26.05
PGSC0003DMT400059673	Potato	nucleus	20.8	24.41
PGSC0003DMT400080069	Potato	nucleus	24.4	24.3
PGSC0003DMT400079980	Potato	nucleus	18.8	20.35
PGSC0003DMT400021144	Potato	nucleus	10.0	19.53

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CLH8	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400027208
PGSC:PGSC0003DMG400027208	EnsemblPlants:PGSC0003DMT400069966	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002968DD6	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027208]

Coordinates

chr5:-:48637085..48638531

Molecular Weight (calculated)

28138.9 Da

IEP (calculated)

9.119

GRAVY (calculated)

-0.750

Length

250 amino acids

Sequence
(BLAST)

001: MFGVDEHQDC YNTTTSSIFD LLMFPSQQQR FITCSSLPES SSILSDHLIS NVVPVIPNLS SISSSSTELP AHEDHQHKYK KQLKPNKKKQ KGKKEPRFAF
101: MTKSEVDHLD DGFRWRKYGQ KAVKNSPFPR SYYRCTTSSC GVKKRVERSI QDTSIVVTTY EGVHTHPCPL TPRGWVGVQP VTTTYGGRVG GGDSGGRSHY
201: GDYSSSLFST NNSLQEKRFW NSSNSSLAKD DHGLLQDMVS SRMRSDLIEE

Best Arabidopsis Sequence Match ( AT5G49520.1 )
(BLAST)

001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK

Arabidopsis Description

WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.