Factsheet for PGSC0003DMT400052057

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g094270.1.1	Tomato	nucleus	78.01	83.97
VIT_17s0000g01280.t01	Wine grape	nucleus	55.32	51.66
PGSC0003DMT400056352	Potato	nucleus	62.41	51.16
GSMUA_Achr9P29350_001	Banana	nucleus	57.45	50.94
GSMUA_Achr9P01400_001	Banana	nucleus	63.12	49.17
KRH41119	Soybean	nucleus	51.06	48.98
GSMUA_AchrUn_...	Banana	nucleus	59.57	47.46
GSMUA_Achr6P06360_001	Banana	nucleus	59.57	45.65
HORVU2Hr1G001780.1	Barley	nucleus	59.57	42.86
TraesCS2A01G011000.1	Wheat	nucleus	60.28	41.46
TraesCS2D01G011700.1	Wheat	nucleus	59.57	40.78
KRH54160	Soybean	nucleus	46.1	40.62
TraesCS2B01G010500.1	Wheat	nucleus	58.87	40.49
PGSC0003DMT400083306	Potato	nucleus	29.08	40.2
Zm00001d007329_P001	Maize	nucleus	60.99	39.09
EES08501	Sorghum	nucleus	60.28	37.78
Os11t0490900-01	Rice	nucleus	63.83	37.19
Zm00001d049173_P001	Maize	nucleus	60.28	37.12
PGSC0003DMT400080128	Potato	extracellular	30.5	31.16
PGSC0003DMT400032090	Potato	nucleus	43.97	27.19
PGSC0003DMT400069966	Potato	nucleus	39.72	22.4
PGSC0003DMT400021144	Potato	nucleus	19.86	21.88
PGSC0003DMT400050745	Potato	nucleus	36.17	21.79
PGSC0003DMT400080069	Potato	nucleus	38.3	21.51
PGSC0003DMT400059673	Potato	nucleus	29.79	19.72
PGSC0003DMT400023368	Potato	nucleus	43.97	19.56
PGSC0003DMT400079980	Potato	nucleus	31.21	19.05
PGSC0003DMT400025113	Potato	nucleus	41.84	18.55
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	42.55	18.4
PGSC0003DMT400044721	Potato	nucleus	40.43	17.87
PGSC0003DMT400020102	Potato	nucleus	40.43	17.07
PGSC0003DMT400029812	Potato	nucleus	40.43	16.81

Protein Annotations

EntrezGene:102581569	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1BSQ7	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400020206	PGSC:PGSC0003DMG400020206	EnsemblPlants:PGSC0003DMT400052057	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002958283	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006338711.1
SEG:seg	:	:	:	:	:

Description

WRKY transcription factor-b [Source:PGSC_GENE;Acc:PGSC0003DMG400020206]

Coordinates

chr2:-:48063218..48065083

Molecular Weight (calculated)

16455.8 Da

IEP (calculated)

9.955

GRAVY (calculated)

-0.876

Length

141 amino acids

Sequence
(BLAST)

001: MENVVVGYYS MNGGLKTTSR DEMMGVVQNH NLSVKNKKIK KPRFAFQTKS QVDILDDGYR WRKYGQKAVK NNNYPRSYYR CTHEGCNVKK QVQRLSKDET
101: VVVTTYEGMH THPIDKPNDN FEQILHQMHI LPNPPIPIPF N

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.