Factsheet for PGSC0003DMT400083306

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059673	Potato	nucleus	96.08	46.01
VIT_04s0069g00980.t01	Wine grape	nucleus	45.1	45.54
Solyc12g056750.1.1	Tomato	nucleus	82.35	44.68
PGSC0003DMT400080128	Potato	extracellular	49.02	36.23
Bra037796.1-P	Field mustard	nucleus	51.96	31.55
VIT_04s0069g00970.t01	Wine grape	nucleus	48.04	31.41
CDY18694	Canola	nucleus	52.94	31.21
KRH59457	Soybean	nucleus	55.88	30.32
KRH43323	Soybean	nucleus	53.92	29.89
GSMUA_Achr8P26240_001	Banana	nucleus	50.0	29.65
PGSC0003DMT400052057	Potato	nucleus	40.2	29.08
VIT_07s0031g01710.t01	Wine grape	nucleus	50.98	28.89
Bra024328.1-P	Field mustard	nucleus	55.88	27.67
CDX81259	Canola	nucleus	53.92	27.64
AT5G64810.1	Thale cress	nucleus	51.96	27.32
GSMUA_Achr7P23980_001	Banana	mitochondrion	45.1	27.22
KRH64140	Soybean	nucleus	51.96	27.04
Bra031900.1-P	Field mustard	nucleus	51.96	26.9
CDY31301	Canola	nucleus	51.96	26.9
CDY08849	Canola	nucleus	53.92	26.7
GSMUA_Achr4P08880_001	Banana	nucleus	43.14	26.67
KRH53804	Soybean	nucleus	50.98	26.53
CDY14512	Canola	nucleus	52.94	26.21
PGSC0003DMT400079980	Potato	nucleus	57.84	25.54
PGSC0003DMT400056352	Potato	nucleus	40.2	23.84
CDY46824	Canola	nucleus	53.92	18.97
PGSC0003DMT400021144	Potato	nucleus	22.55	17.97
PGSC0003DMT400032090	Potato	nucleus	37.25	16.67
PGSC0003DMT400050745	Potato	nucleus	37.25	16.24
PGSC0003DMT400080069	Potato	nucleus	39.22	15.94
PGSC0003DMT400069966	Potato	nucleus	38.24	15.6
PGSC0003DMT400023368	Potato	nucleus	40.2	12.93
PGSC0003DMT400025113	Potato	nucleus	40.2	12.89
PGSC0003DMT400020102	Potato	nucleus	42.16	12.87
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	40.2	12.58
PGSC0003DMT400044721	Potato	nucleus	39.22	12.54
PGSC0003DMT400029812	Potato	nucleus	38.24	11.5

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1D6V7	PFAM:PF03106	EnsemblPlantsGene:PGSC0003DMG400033177
PGSC:PGSC0003DMG400033177	EnsemblPlants:PGSC0003DMT400083306	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI0002960DD1	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	:	:

Description

WRKY transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400033177]

Coordinates

chr00:-:34450034..34452304

Molecular Weight (calculated)

12101.2 Da

IEP (calculated)

9.567

GRAVY (calculated)

-1.109

Length

102 amino acids

Sequence
(BLAST)

001: MIKKNERHVI AFSTKTQLEI LDDGYKWRKY GKKTVKSNTN YLRNYYKCSI RGCEVKKRVE RDGHDSSNLI TTYEGKHNHE INSSIIYNHV EADSEFELNS
101: QR

Best Arabidopsis Sequence Match ( AT5G64810.1 )
(BLAST)

001: MNISQNPSPN FTYFSDENFI NPFMDNNDFS NLMFFDIDEG GNNGLIEEEI SSPTSIVSSE TFTGESGGSG SATTLSKKES TNRGSKESDQ TKETGHRVAF
101: RTRSKIDVMD DGFKWRKYGK KSVKNNINKR NYYKCSSEGC SVKKRVERDG DDAAYVITTY EGVHNHESLS NVYYNEMVLS YDHDNWNQHS LLRS

Arabidopsis Description

WRKY51Probable WRKY transcription factor 51 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.