Factsheet for PGSC0003DMT400072958

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012500.2.1	Tomato	nucleus	96.01	95.72
GSMUA_Achr6P34870_001	Banana	nucleus	27.3	60.14
KRH70870	Soybean	nucleus	47.55	52.9
KRH75010	Soybean	nucleus	46.93	51.52
VIT_01s0011g00720.t01	Wine grape	nucleus	47.55	50.82
Os03t0758000-01	Rice	nucleus, plastid	32.21	45.45
AT1G69310.2	Thale cress	nucleus	39.26	44.6
CDY04276	Canola	nucleus	38.65	43.9
Bra004370.1-P	Field mustard	nucleus	39.57	43.88
CDX95947	Canola	nucleus	39.57	43.88
CDY07352	Canola	nucleus	38.65	43.6
Bra004002.1-P	Field mustard	nucleus	38.34	43.25
CDY40910	Canola	nucleus	38.96	43.2
PGSC0003DMT400052057	Potato	nucleus	18.4	42.55
CDY54139	Canola	nucleus	38.65	42.28
Bra038313.1-P	Field mustard	nucleus	38.04	41.47
CDY50313	Canola	nucleus	38.34	40.45
PGSC0003DMT400083306	Potato	nucleus	12.58	40.2
HORVU0Hr1G003340.1	Barley	nucleus	34.36	39.3
TraesCS2B01G280300.1	Wheat	nucleus	34.36	39.3
TraesCS2D01G262100.1	Wheat	nucleus	34.05	38.95
TraesCS2A01G261900.1	Wheat	nucleus	34.05	38.81
Os07t0111400-00	Rice	nucleus	33.74	37.93
TraesCS5A01G395100.1	Wheat	nucleus	35.89	37.74
TraesCS5B01G399900.1	Wheat	nucleus	35.89	37.62
KXG34273	Sorghum	mitochondrion	31.29	37.5
TraesCS5D01G404400.1	Wheat	nucleus	35.28	37.1
PGSC0003DMT400069966	Potato	nucleus	27.91	36.4
EER90854	Sorghum	nucleus	36.5	35.95
PGSC0003DMT400080128	Potato	extracellular	15.03	35.51
PGSC0003DMT400056352	Potato	nucleus	18.71	35.47
Zm00001d034073_P001	Maize	nucleus	35.89	35.35
HORVU5Hr1G096420.20	Barley	mitochondrion, nucleus	32.21	34.77
Zm00001d018656_P001	Maize	nucleus	35.28	34.64
PGSC0003DMT400044721	Potato	nucleus	29.14	29.78
PGSC0003DMT400025113	Potato	nucleus	28.83	29.56
PGSC0003DMT400029812	Potato	nucleus	30.67	29.5
PGSC0003DMT400023368	Potato	nucleus	26.99	27.76
PGSC0003DMT400050745	Potato	nucleus	19.02	26.5
PGSC0003DMT400020102	Potato	nucleus	26.69	26.05
PGSC0003DMT400032090	Potato	nucleus	17.48	25.0
PGSC0003DMT400080069	Potato	nucleus	19.02	24.7
PGSC0003DMT400059673	Potato	nucleus	14.42	22.07
PGSC0003DMT400021144	Potato	nucleus	7.98	20.31
PGSC0003DMT400079980	Potato	nucleus	13.19	18.61

Protein Annotations

EntrezGene:102603056	MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:M1CRA2	PFAM:PF03106
EnsemblPlantsGene:PGSC0003DMG400028381	PGSC:PGSC0003DMG400028381	EnsemblPlants:PGSC0003DMT400072958	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF77
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI000294C872	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_006348711.1
RefSeq:XP_015164806.1	SEG:seg	:	:	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028381]

Coordinates

chr5:+:369472..375911

Molecular Weight (calculated)

35284.2 Da

IEP (calculated)

5.247

GRAVY (calculated)

-0.860

Length

326 amino acids

Sequence
(BLAST)

001: MDENDKQVDN DPLPSGTTGG AAAAVFTGAA SESSWSLGGG DDESDNVYFF GTSSTDRESS ILTEFGWNFQ PDGNRDVRAG GDGSRFHRID EDLAGNSTTT
101: ASASASVTEP TVTEKITDEP VSSSCSDDPP EKSTASGSSS ASRPPSDTAS KVKKKGQKRI RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY
201: RCTNTKCTVK KRVERSSEDS SIVITTYEGQ HCHHTVGFPR GGLINHEAFT SQLTPLPSQF YHPSGVQYPH ELVPMSSPAA PESHTMPGET GPEPIRLPET
301: SQPDATQQPT DEGLLGDIVP PGMRSR

Best Arabidopsis Sequence Match ( AT1G69310.4 )
(BLAST)

001: MNDPDNPDLS NDDSAWRELT LTAQDSDFFD RDTSNILSDF GWNLHHSSDH PHSLRFDSDL TQTTGVKPTT VTSSCSSSAA VSVAVTSTNN NPSATSSSSE
101: DPAENSTASA EKTPPPETPV KEKKKAQKRI RQPRFAFMTK SDVDNLEDGY RWRKYGQKAV KNSPFPRSYY RCTNSRCTVK KRVERSSDDP SIVITTYEGQ
201: HCHQTIGFPR GGILTAHDPH SFTSHHHLPP PLPNPYYYQE LLHQLHRDNN APSPRLPRPT TEDTPAVSTP SEEGLLGDIV PQTMRNP

Arabidopsis Description

WRKY57At1g69310 [Source:UniProtKB/TrEMBL;Acc:Q147N6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.