Factsheet for VIT_01s0011g00720.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34870_001	Banana	nucleus	30.16	62.16
KRH70870	Soybean	nucleus	59.67	62.12
KRH75010	Soybean	nucleus	58.03	59.6
AT1G69310.2	Thale cress	nucleus	48.85	51.92
CDY07352	Canola	nucleus	49.18	51.9
CDY04276	Canola	nucleus	48.52	51.57
Bra004002.1-P	Field mustard	nucleus	48.85	51.56
CDY54139	Canola	nucleus	49.18	50.34
CDX95947	Canola	nucleus	47.21	48.98
Bra004370.1-P	Field mustard	nucleus	47.21	48.98
CDY40910	Canola	nucleus	46.89	48.64
Bra038313.1-P	Field mustard	nucleus	47.54	48.49
CDY50313	Canola	nucleus	48.2	47.57
PGSC0003DMT400072958	Potato	mitochondrion, nucleus	50.82	47.55
Solyc05g012500.2.1	Tomato	nucleus	50.82	47.4
VIT_04s0069g00980.t01	Wine grape	nucleus	15.41	46.53
Os03t0758000-01	Rice	nucleus, plastid	33.44	44.16
Os07t0111400-00	Rice	nucleus	40.33	42.41
HORVU0Hr1G003340.1	Barley	nucleus	39.34	42.11
TraesCS2B01G280300.1	Wheat	nucleus	39.34	42.11
TraesCS2D01G262100.1	Wheat	nucleus	38.69	41.4
TraesCS2A01G261900.1	Wheat	nucleus	38.69	41.26
TraesCS5A01G395100.1	Wheat	nucleus	41.64	40.97
VIT_17s0000g01280.t01	Wine grape	nucleus	20.0	40.4
TraesCS5D01G404400.1	Wheat	nucleus	40.98	40.32
KXG34273	Sorghum	mitochondrion	35.41	39.71
TraesCS5B01G399900.1	Wheat	nucleus	40.0	39.23
Zm00001d034073_P001	Maize	nucleus	39.67	36.56
EER90854	Sorghum	nucleus	39.34	36.25
VIT_04s0008g01470.t01	Wine grape	nucleus	19.67	36.14
Zm00001d018656_P001	Maize	nucleus	39.34	36.14
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	21.97	35.45
HORVU5Hr1G096420.20	Barley	mitochondrion, nucleus	35.08	35.43
VIT_14s0068g01770.t01	Wine grape	nucleus	20.66	34.62
VIT_05s0077g00730.t01	Wine grape	nucleus	34.43	33.98
VIT_04s0069g00970.t01	Wine grape	nucleus	17.38	33.97
VIT_07s0005g01710.t01	Wine grape	nucleus	33.44	33.77
VIT_10s0003g02810.t01	Wine grape	nucleus	33.77	32.29
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	20.98	31.84
VIT_12s0028g00270.t01	Wine grape	nucleus	32.46	31.83
VIT_07s0031g01710.t01	Wine grape	nucleus	18.03	30.56
VIT_07s0031g01840.t01	Wine grape	nucleus	20.98	28.32

Protein Annotations

EntrezGene:100262937	wikigene:100262937	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB51066	ProteinID:CCB51066.1
UniProt:F6HF79	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100262937	wikigene:LOC100262937	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF77	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00015C7F35
ArrayExpress:VIT_01s0011g00720	EnsemblPlantsGene:VIT_01s0011g00720	EnsemblPlants:VIT_01s0011g00720.t01	unigene:Vvi.15862	unigene:Vvi.25241	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002274549	RefSeq:XP_002274549.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:628681..633595

Molecular Weight (calculated)

33360.3 Da

IEP (calculated)

5.812

GRAVY (calculated)

-0.882

Length

305 amino acids

Sequence
(BLAST)

001: MDDNDNPDPG NDFSGDSSWT LGAESDSVYF FGSDKESSIL SEFGWNLQPE EAHHRSLEPE RFGDVERIES SDLAGRLPLA ESSGLECSAA AAQIGSAEKA
101: GDASTSNPSV SSSSSEDPPE KSTGSGGGKP PEIPSKGRKK GQKRIRQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS KCTVKKRVER
201: SSEDPSIVIT TYEGQHCHHT VGFPRGGVIS QEVTFDGRMT PPLTSHFYYP DMSFHREVSH SGSMAQSHQV PAQAREARAL AEPSPQLPTD EGLLGDMVPP
301: GMRNG

Best Arabidopsis Sequence Match ( AT1G69310.4 )
(BLAST)

001: MNDPDNPDLS NDDSAWRELT LTAQDSDFFD RDTSNILSDF GWNLHHSSDH PHSLRFDSDL TQTTGVKPTT VTSSCSSSAA VSVAVTSTNN NPSATSSSSE
101: DPAENSTASA EKTPPPETPV KEKKKAQKRI RQPRFAFMTK SDVDNLEDGY RWRKYGQKAV KNSPFPRSYY RCTNSRCTVK KRVERSSDDP SIVITTYEGQ
201: HCHQTIGFPR GGILTAHDPH SFTSHHHLPP PLPNPYYYQE LLHQLHRDNN APSPRLPRPT TEDTPAVSTP SEEGLLGDIV PQTMRNP

Arabidopsis Description

WRKY57At1g69310 [Source:UniProtKB/TrEMBL;Acc:Q147N6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.