Factsheet for VIT_07s0031g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06260_001	Banana	nucleus	38.05	83.5
CDY72079	Canola	nucleus	37.17	75.68
KRH64133	Soybean	nucleus	72.12	69.66
KRH43340	Soybean	nucleus	71.68	68.94
KRH53810	Soybean	nucleus	70.8	67.8
KRH59476	Soybean	nucleus	62.39	65.28
PGSC0003DMT400050745	Potato	nucleus	62.39	60.26
Solyc04g051540.2.1	Tomato	nucleus	61.95	59.83
GSMUA_Achr7P13310_001	Banana	nucleus	53.1	50.42
CDX72701	Canola	nucleus	54.42	43.62
CDY53184	Canola	nucleus	56.19	43.34
Bra033616.1-P	Field mustard	nucleus	55.75	43.15
TraesCS3A01G116200.1	Wheat	plastid	50.0	43.13
TraesCS3D01G118100.1	Wheat	nucleus, plastid	49.56	42.75
Bra010683.1-P	Field mustard	nucleus	55.75	42.57
AT4G39410.1	Thale cress	nucleus	57.08	42.43
CDY12144	Canola	nucleus	55.31	42.37
TraesCS3B01G135300.1	Wheat	nucleus, plastid	49.56	42.26
HORVU3Hr1G021120.1	Barley	nucleus, plastid	49.12	42.05
VIT_04s0069g00980.t01	Wine grape	nucleus	18.58	41.58
CDY41978	Canola	nucleus	53.98	40.94
Bra011861.1-P	Field mustard	nucleus	53.98	40.94
Os01t0182700-01	Rice	nucleus	50.44	40.71
GSMUA_Achr10P...	Banana	nucleus	49.12	40.36
Zm00001d039584_P001	Maize	nucleus	49.12	37.88
OQU86187	Sorghum	mitochondrion, nucleus	47.79	36.61
VIT_17s0000g01280.t01	Wine grape	nucleus	24.34	36.42
VIT_04s0008g01470.t01	Wine grape	nucleus	25.22	34.34
VIT_14s0068g01770.t01	Wine grape	nucleus	26.11	32.42
VIT_04s0069g00970.t01	Wine grape	nucleus	21.24	30.77
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	23.89	28.57
VIT_07s0031g01710.t01	Wine grape	nucleus	21.68	27.22
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	23.45	26.37
VIT_05s0077g00730.t01	Wine grape	nucleus	32.3	23.62
VIT_07s0005g01710.t01	Wine grape	nucleus	30.53	22.85
VIT_10s0003g02810.t01	Wine grape	nucleus	31.86	22.57
VIT_12s0028g00270.t01	Wine grape	nucleus	30.53	22.19
VIT_01s0011g00720.t01	Wine grape	nucleus	28.32	20.98

Protein Annotations

EntrezGene:100247547	wikigene:100247547	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI21534	ProteinID:CBI21534.3
UniProt:D7SW85	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100247547	wikigene:LOC100247547	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF47	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC69922
UniParc:UPI00019839BD	ArrayExpress:VIT_07s0031g01840	EnsemblPlantsGene:VIT_07s0031g01840	EnsemblPlants:VIT_07s0031g01840.t01	unigene:Vvi.16760	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002279024	RefSeq:XP_002279024.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:+:17958339..17960800

Molecular Weight (calculated)

25719.5 Da

IEP (calculated)

9.201

GRAVY (calculated)

-0.681

Length

226 amino acids

Sequence
(BLAST)

001: MSTTSQAMLN QGLFEDQEMP SQLGFYSFHP NLSFPQVGCQ QSLKAFNIPP SLAADAPSSL TEALLSSAPT KQREDITPHL GGAQLLSLQR STANLWAWGE
101: VNECLSSKRS IGGDDHLGVS AMKMKKIKAR RKVREPRFCF KTMSEVDVLD DGYKWRKYGQ KVVKNTQHPR SYYRCTQDNC RVKKRVERLA EDPRMVITTY
201: EGRHIHSPSH DLEESQAPSH LNNFFW

Best Arabidopsis Sequence Match ( AT4G39410.1 )
(BLAST)

001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW

Arabidopsis Description

WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.