Factsheet for VIT_14s0068g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13080.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07230_001	Banana	mitochondrion	46.15	73.04
VIT_17s0000g01280.t01	Wine grape	nucleus	51.65	62.25
Solyc05g015850.2.1	Tomato	nucleus	57.14	60.47
PGSC0003DMT400056352	Potato	nucleus	57.14	60.47
AT5G13080.1	Thale cress	nucleus, plastid	47.8	60.0
Bra006178.1-P	Field mustard	nucleus	46.7	57.82
CDX78504	Canola	nucleus	46.7	57.82
Bra008858.1-P	Field mustard	nucleus	46.7	57.82
CDX69672	Canola	nucleus	46.7	57.82
CDX70492	Canola	nucleus	46.7	57.82
KRG94564	Soybean	nucleus	59.34	57.45
CDX97223	Canola	nucleus	46.15	57.14
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	55.49	53.44
VIT_04s0069g00980.t01	Wine grape	nucleus	24.73	44.55
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	38.46	34.83
VIT_04s0069g00970.t01	Wine grape	nucleus	24.73	28.85
VIT_07s0031g01710.t01	Wine grape	nucleus	28.02	28.33
VIT_04s0008g01470.t01	Wine grape	nucleus	25.27	27.71
VIT_07s0031g01840.t01	Wine grape	nucleus	32.42	26.11
VIT_07s0005g01710.t01	Wine grape	nucleus	37.91	22.85
VIT_05s0077g00730.t01	Wine grape	nucleus	36.81	21.68
VIT_12s0028g00270.t01	Wine grape	nucleus	35.71	20.9
VIT_01s0011g00720.t01	Wine grape	nucleus	34.62	20.66
VIT_10s0003g02810.t01	Wine grape	nucleus	35.16	20.06

Protein Annotations

EntrezGene:100263502	wikigene:100263502	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM470860	ProteinID:CAN66011
ProteinID:CAN66011.1	ProteinID:CBI21329	ProteinID:CBI21329.3	UniProt:D7SVN0	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576
EntrezGene:LOC100263502	wikigene:LOC100263502	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF85
SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI00015C84BF	ArrayExpress:VIT_14s0068g01770	EnsemblPlantsGene:VIT_14s0068g01770	EnsemblPlants:VIT_14s0068g01770.t01
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002274387	RefSeq:XP_002274387.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:25479103..25481917

Molecular Weight (calculated)

20788.5 Da

IEP (calculated)

9.772

GRAVY (calculated)

-0.884

Length

182 amino acids

Sequence
(BLAST)

001: MENYQNFFAC SSSAPPPASM GFTSNMESSN VFGNVHGHSI PNGFLGLKST EIHVPTGQEV ENISRSSGGF GRSENEVKSC KKKYEKKIRK PRYAFQTRSQ
101: VDILDDGYRW RKYGQKAVKN NKFPRSYYRC THQGCNVKKQ VQRLSKDESI VVTTYEGVHT HPIEKPTDNF EHILNQMQIY AP

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.