Factsheet for VIT_05s0077g00730.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g01710.t01	Wine grape	nucleus	46.93	48.01
VIT_04s0069g00980.t01	Wine grape	nucleus	14.56	44.55
VIT_17s0000g01280.t01	Wine grape	nucleus	21.36	43.71
KRH50705	Soybean	nucleus	53.4	42.2
KRH02380	Soybean	nucleus	53.4	41.46
GSMUA_AchrUn_...	Banana	nucleus	37.86	38.87
Bra036138.1-P	Field mustard	nucleus	44.01	38.53
CDY72613	Canola	nucleus	40.13	38.39
VIT_10s0003g02810.t01	Wine grape	nucleus	38.84	37.62
VIT_04s0008g01470.t01	Wine grape	nucleus	20.06	37.35
VIT_14s0068g01770.t01	Wine grape	nucleus	21.68	36.81
GSMUA_Achr8P10740_001	Banana	nucleus	36.89	36.42
CDY05620	Canola	nucleus	45.95	36.32
CDX85413	Canola	nucleus	46.28	35.84
Bra010032.1-P	Field mustard	nucleus	45.95	35.59
AT5G49520.1	Thale cress	nucleus	45.63	35.34
VIT_01s0010g03930.t01	Wine grape	nucleus, plastid	21.36	34.92
Bra020628.1-P	Field mustard	nucleus	43.69	34.44
VIT_01s0011g00720.t01	Wine grape	nucleus	33.98	34.43
VIT_12s0028g00270.t01	Wine grape	nucleus	33.66	33.44
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	21.36	32.84
VIT_07s0031g01840.t01	Wine grape	nucleus	23.62	32.3
VIT_04s0069g00970.t01	Wine grape	nucleus	15.86	31.41
VIT_07s0031g01710.t01	Wine grape	nucleus	17.8	30.56

Protein Annotations

EntrezGene:100260212	wikigene:100260212	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI22862	ProteinID:CBI22862.3
ncoils:Coil	UniProt:D7SYJ2	EMBL:FN595246	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100260212	wikigene:LOC100260212
PFAM:PF03106	PIRSF:PIRSF038130	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF80	SMART:SM00774
SUPFAM:SSF118290	TIGR:TC51831	InterPro:TF_WRKY_IIc	UniParc:UPI00015CBFAC	ArrayExpress:VIT_05s0077g00730	EnsemblPlantsGene:VIT_05s0077g00730
EnsemblPlants:VIT_05s0077g00730.t01	unigene:Vvi.159	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002279385	RefSeq:XP_002279385.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:530097..531696

Molecular Weight (calculated)

34410.0 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.825

Length

309 amino acids

Sequence
(BLAST)

001: MEEKEQVKTE NSMANSTFSD QIPASCAFSS SIFDMPCEVE KGSLGFMDLL GIQDYSPSLF DLLQPPLAPH PLTSPASSAP PESSEVVNAP ATPNSSSISS
101: SSTEAANDDQ TKAAEEEEQD QEKNKQQLKP KKKNQKRQRE PRFAFITKSE VDHLDDGYRW RKYGQKAVKN SPFPRSYYRC TTAACGVKKR VERSSDDPTT
201: VVTTYEGQHT HPCPVMPRGS LGIPPEAVTF SAAAASSFAM PQPQYQQQQQ PYFNNSSLSL NFNHMNSSSI NPTFLHERRL RPSPASLLRD HGLLEDLLPS
301: QMFKEPKEE

Best Arabidopsis Sequence Match ( AT5G49520.1 )
(BLAST)

001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK

Arabidopsis Description

WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.