Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010032.1-P | Field mustard | nucleus | 84.46 | 84.46 |
| CDX85413 | Canola | nucleus | 83.96 | 83.96 |
| CDY72613 | Canola | nucleus | 66.42 | 82.04 |
| Bra036138.1-P | Field mustard | nucleus | 72.43 | 81.87 |
| CDY05620 | Canola | nucleus | 79.95 | 81.59 |
| Bra020628.1-P | Field mustard | nucleus | 78.95 | 80.36 |
| AT2G46130.1 | Thale cress | nucleus | 14.79 | 54.13 |
| VIT_05s0077g00730.t01 | Wine grape | nucleus | 35.34 | 45.63 |
| AT5G13080.1 | Thale cress | nucleus, plastid | 15.79 | 43.45 |
| AT3G01970.1 | Thale cress | nucleus | 15.29 | 41.5 |
| KRH36956 | Soybean | nucleus | 33.58 | 40.48 |
| KRH11917 | Soybean | nucleus | 33.58 | 37.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.57 | 36.54 |
| AT1G69310.2 | Thale cress | nucleus | 26.07 | 36.24 |
| GSMUA_Achr8P10740_001 | Banana | nucleus | 27.57 | 35.14 |
| AT5G41570.1 | Thale cress | nucleus | 15.29 | 34.08 |
| AT1G29860.1 | Thale cress | nucleus | 23.81 | 33.69 |
| AT2G47260.1 | Thale cress | nucleus | 28.32 | 33.53 |
| AT5G26170.1 | Thale cress | nucleus | 14.04 | 32.37 |
| AT3G62340.1 | Thale cress | nucleus | 22.31 | 32.13 |
| AT4G18170.1 | Thale cress | nucleus | 25.06 | 31.45 |
| AT1G64000.1 | Thale cress | nucleus | 15.04 | 30.77 |
| AT2G44745.1 | Thale cress | nucleus | 16.54 | 30.28 |
| AT5G64810.1 | Thale cress | nucleus | 13.78 | 28.35 |
| AT5G46350.1 | Thale cress | nucleus | 22.56 | 27.61 |
| AT4G39410.1 | Thale cress | nucleus | 17.54 | 23.03 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:835012 | ProteinID:AED95824.1 | EMBL:AF442397 | ArrayExpress:AT5G49520 |
| EnsemblPlantsGene:AT5G49520 | RefSeq:AT5G49520 | TAIR:AT5G49520 | RefSeq:AT5G49520-TAIR-G | EnsemblPlants:AT5G49520.1 | TAIR:AT5G49520.1 |
| EMBL:AY063870 | EMBL:AY091224 | Unigene:At.27170 | ProteinID:BAB10765.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 |
| GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0042742 | GO:GO:0043565 | GO:GO:0045893 |
| InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_199763.1 | PFAM:PF03106 | PO:PO:0000037 | PO:PO:0000293 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50811 |
| PANTHER:PTHR31221 | PANTHER:PTHR31221:SF80 | UniProt:Q9FGZ4 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI00000017B3 |
| Symbol:WRKY48 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
WRKY48Probable WRKY transcription factor 48 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGZ4]
Coordinates
chr5:+:20090648..20093346
Molecular Weight (calculated)
44727.9 Da
IEP (calculated)
6.514
GRAVY (calculated)
-1.085
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKKEEDHH HQQQQQQQKE IKNTETKIEQ EQEQEQKQEI SQASSSSNMA NLVTSSDHHP LELAGNLSSI FDTSSLPFPY SYFEDHSSNN PNSFLDLLRQ
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK
101: DHQFASSSNS SSFSFDAFPL PNNNNNTSFF TDLPLPQAES SEVVNTTPTS PNSTSVSSSS NEAANDNNSG KEVTVKDQEE GDQQQEQKGT KPQLKAKKKN
201: QKKAREARFA FLTKSDIDNL DDGYRWRKYG QKAVKNSPYP RSYYRCTTVG CGVKKRVERS SDDPSIVMTT YEGQHTHPFP MTPRGHIGML TSPILDHGAT
301: TASSSSFSIP QPRYLLTQHH QPYNMYNNNS LSMINRRSSD GTFVNPGPSS SFPGFGYDMS QASTSTSSSI RDHGLLQDIL PSQIRSDTIN TQTNEENKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.