Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01523 | Canola | nucleus | 84.91 | 86.54 |
| Bra012614.1-P | Field mustard | nucleus | 84.59 | 86.22 |
| CDX90417 | Canola | nucleus | 84.59 | 85.94 |
| CDY09083 | Canola | nucleus | 84.28 | 85.62 |
| CDY08894 | Canola | nucleus | 77.04 | 83.33 |
| CDX76541 | Canola | nucleus | 76.73 | 82.99 |
| Bra040926.1-P | Field mustard | nucleus | 76.73 | 82.99 |
| CDX78832 | Canola | nucleus | 79.87 | 82.47 |
| Bra013289.1-P | Field mustard | nucleus | 79.56 | 82.14 |
| CDX99495 | Canola | nucleus | 79.25 | 80.77 |
| AT5G46350.1 | Thale cress | nucleus | 60.38 | 58.9 |
| AT2G46130.1 | Thale cress | nucleus | 16.35 | 47.71 |
| VIT_10s0003g02810.t01 | Wine grape | nucleus | 45.91 | 45.77 |
| AT1G29860.1 | Thale cress | nucleus | 38.68 | 43.62 |
| KRH58435 | Soybean | nucleus | 48.43 | 43.02 |
| KRH42308 | Soybean | nucleus | 48.74 | 41.78 |
| AT3G01970.1 | Thale cress | nucleus | 18.55 | 40.14 |
| AT5G13080.1 | Thale cress | nucleus, plastid | 18.24 | 40.0 |
| GSMUA_Achr6P27090_001 | Banana | nucleus | 33.65 | 35.67 |
| OQU78504 | Sorghum | nucleus | 29.25 | 35.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.19 | 33.33 |
| AT5G26170.1 | Thale cress | nucleus | 17.92 | 32.95 |
| GSMUA_Achr9P06750_001 | Banana | nucleus | 30.5 | 32.88 |
| AT2G44745.1 | Thale cress | nucleus | 21.7 | 31.65 |
| AT2G47260.1 | Thale cress | nucleus | 32.7 | 30.86 |
| AT5G41570.1 | Thale cress | nucleus | 17.3 | 30.73 |
| TraesCS1D01G430000.1 | Wheat | nucleus | 27.67 | 29.73 |
| AT1G69310.2 | Thale cress | nucleus | 26.73 | 29.62 |
| AT3G62340.1 | Thale cress | nucleus | 25.79 | 29.6 |
| TraesCS1A01G421800.1 | Wheat | nucleus | 26.42 | 29.37 |
| TraesCS1B01G453200.1 | Wheat | nucleus | 26.1 | 28.92 |
| TraesCS1D01G429800.1 | Wheat | nucleus | 26.1 | 28.82 |
| Os05t0583000-01 | Rice | nucleus | 30.19 | 28.49 |
| HORVU1Hr1G092130.1 | Barley | nucleus | 27.67 | 28.48 |
| TraesCS1A01G421900.1 | Wheat | nucleus | 18.55 | 28.37 |
| TraesCS1D01G429900.1 | Wheat | nucleus | 27.36 | 28.34 |
| TraesCS1B01G453300.1 | Wheat | nucleus | 27.36 | 27.88 |
| AT1G64000.1 | Thale cress | nucleus | 16.98 | 27.69 |
| AT5G64810.1 | Thale cress | nucleus | 16.35 | 26.8 |
| AT4G39410.1 | Thale cress | nucleus | 24.21 | 25.33 |
| AT5G49520.1 | Thale cress | nucleus | 31.45 | 25.06 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:827542 | UniProt:A0A178V3M3 | ProteinID:AEE84006.1 | EMBL:AF442393 |
| ArrayExpress:AT4G18170 | EnsemblPlantsGene:AT4G18170 | RefSeq:AT4G18170 | TAIR:AT4G18170 | RefSeq:AT4G18170-TAIR-G | EnsemblPlants:AT4G18170.1 |
| TAIR:AT4G18170.1 | EMBL:AY070761 | EMBL:AY116943 | ProteinID:CAA16788.1 | ProteinID:CAB78819.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0042659 | GO:GO:0043565 |
| InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_193551.1 | ProteinID:OAP00331.1 | PFAM:PF03106 | PIRSF:PIRSF038130 |
| PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009047 | PFscan:PS50811 |
| PANTHER:PTHR31221 | PANTHER:PTHR31221:SF56 | UniProt:Q8VWJ2 | SMART:SM00774 | SUPFAM:SSF118290 | InterPro:TF_WRKY_IIc |
| UniParc:UPI0000001476 | Symbol:WRKY28 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
Coordinates
chr4:+:10061214..10062893
Molecular Weight (calculated)
35564.9 Da
IEP (calculated)
7.597
GRAVY (calculated)
-0.914
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.