Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78832 | Canola | nucleus | 95.51 | 96.75 |
| Bra013289.1-P | Field mustard | nucleus | 95.19 | 96.43 |
| CDY01523 | Canola | nucleus | 83.65 | 83.65 |
| CDY09083 | Canola | nucleus | 83.01 | 82.75 |
| CDX90417 | Canola | nucleus | 83.01 | 82.75 |
| CDY08894 | Canola | nucleus | 77.56 | 82.31 |
| CDX76541 | Canola | nucleus | 77.24 | 81.97 |
| AT4G18170.1 | Thale cress | nucleus | 80.77 | 79.25 |
| CDY03224 | Canola | nucleus | 56.73 | 55.14 |
| CDY72079 | Canola | nucleus | 19.55 | 54.95 |
| CDY35159 | Canola | nucleus | 56.41 | 54.83 |
| CDY43969 | Canola | nucleus | 54.81 | 53.94 |
| CDY33471 | Canola | nucleus | 55.77 | 53.87 |
| CDX77655 | Canola | nucleus | 55.77 | 53.87 |
| VIT_10s0003g02810.t01 | Wine grape | nucleus | 44.55 | 43.57 |
| KRH58435 | Soybean | nucleus | 48.72 | 42.46 |
| CDX87722 | Canola | nucleus | 42.31 | 42.17 |
| CDY26310 | Canola | nucleus | 35.9 | 41.03 |
| KRH42308 | Soybean | nucleus | 48.4 | 40.7 |
| CDX99859 | Canola | nucleus | 35.58 | 40.66 |
| CDX77096 | Canola | nucleus | 18.59 | 40.28 |
| CDY43194 | Canola | nucleus | 35.26 | 39.71 |
| CDX98155 | Canola | nucleus | 35.58 | 39.08 |
| CDX70492 | Canola | nucleus | 17.95 | 38.1 |
| CDX78504 | Canola | nucleus | 17.95 | 38.1 |
| CDX69672 | Canola | nucleus | 17.63 | 37.41 |
| CDX97223 | Canola | nucleus | 17.63 | 37.41 |
| OQU78504 | Sorghum | nucleus | 30.45 | 36.26 |
| GSMUA_Achr6P27090_001 | Banana | nucleus | 34.29 | 35.67 |
| CDX83415 | Canola | nucleus, plastid | 21.15 | 35.11 |
| CDX95615 | Canola | nucleus, plastid | 21.15 | 34.74 |
| CDY24990 | Canola | nucleus | 18.59 | 34.32 |
| CDY05537 | Canola | nucleus | 18.27 | 33.93 |
| CDX87064 | Canola | nucleus | 18.59 | 33.92 |
| CDY48151 | Canola | nucleus | 18.59 | 33.92 |
| GSMUA_Achr9P06750_001 | Banana | nucleus | 30.77 | 32.54 |
| CDX88219 | Canola | nucleus | 18.27 | 32.39 |
| CDY52627 | Canola | nucleus | 18.27 | 32.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.49 | 31.94 |
| CDY30483 | Canola | nucleus | 22.12 | 31.36 |
| CDY37794 | Canola | nucleus | 31.41 | 31.31 |
| CDY71963 | Canola | nucleus | 21.47 | 31.31 |
| CDY44466 | Canola | nucleus | 17.63 | 31.25 |
| CDY23453 | Canola | nucleus | 21.79 | 31.19 |
| CDY48258 | Canola | nucleus | 21.47 | 31.16 |
| CDX80094 | Canola | nucleus | 31.41 | 31.01 |
| CDY39732 | Canola | nucleus | 17.31 | 30.68 |
| CDY51420 | Canola | nucleus | 31.09 | 29.94 |
| CDY18694 | Canola | nucleus | 16.35 | 29.48 |
| TraesCS1D01G430000.1 | Wheat | nucleus | 27.88 | 29.39 |
| TraesCS1A01G421800.1 | Wheat | nucleus | 26.92 | 29.37 |
| TraesCS1B01G453200.1 | Wheat | nucleus | 26.92 | 29.27 |
| TraesCS1D01G429800.1 | Wheat | nucleus | 26.92 | 29.17 |
| CDY27500 | Canola | nucleus | 31.09 | 29.13 |
| CDY38208 | Canola | nucleus | 17.31 | 29.03 |
| HORVU1Hr1G092130.1 | Barley | nucleus | 28.53 | 28.8 |
| TraesCS1D01G429900.1 | Wheat | nucleus | 28.21 | 28.66 |
| TraesCS1B01G453300.1 | Wheat | nucleus | 28.53 | 28.53 |
| CDY54139 | Canola | nucleus | 27.24 | 28.52 |
| CDY34393 | Canola | nucleus | 17.31 | 28.42 |
| TraesCS1A01G421900.1 | Wheat | nucleus | 18.91 | 28.37 |
| CDY40910 | Canola | nucleus | 26.6 | 28.23 |
| CDX95947 | Canola | nucleus | 26.6 | 28.23 |
| CDY04276 | Canola | nucleus | 25.96 | 28.22 |
| CDY25554 | Canola | nucleus | 16.99 | 28.19 |
| Os05t0583000-01 | Rice | nucleus | 30.45 | 28.19 |
| CDY07352 | Canola | nucleus | 25.96 | 28.03 |
| CDY55479 | Canola | nucleus | 16.67 | 27.96 |
| CDY11416 | Canola | nucleus | 26.6 | 27.85 |
| CDY72613 | Canola | nucleus | 27.88 | 26.93 |
| CDY50313 | Canola | nucleus | 26.6 | 26.86 |
| CDX81259 | Canola | nucleus | 16.99 | 26.63 |
| CDX76630 | Canola | nucleus | 25.0 | 26.26 |
| CDY53184 | Canola | nucleus | 23.72 | 25.26 |
| CDX72701 | Canola | nucleus | 22.76 | 25.18 |
| CDY05620 | Canola | nucleus | 31.41 | 25.06 |
| CDY41978 | Canola | nucleus | 23.72 | 24.83 |
| CDY14512 | Canola | nucleus | 16.03 | 24.27 |
| CDY08849 | Canola | nucleus | 16.03 | 24.27 |
| CDX85413 | Canola | nucleus | 30.45 | 23.81 |
| CDY12144 | Canola | nucleus | 22.44 | 23.73 |
| CDY31301 | Canola | nucleus | 14.42 | 22.84 |
| CDY46824 | Canola | nucleus | 14.1 | 15.17 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078EBM6 | EnsemblPlants:CDX99495 | ProteinID:CDX99495 | ProteinID:CDX99495.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00107863001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PIRSF:PIRSF038130 | PFscan:PS50811 |
| PANTHER:PTHR31221 | PANTHER:PTHR31221:SF56 | SMART:SM00774 | SUPFAM:SSF118290 | InterPro:TF_WRKY_IIc | UniParc:UPI0004EF27B3 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
BnaC01g10570D
Coordinates
chrLK031910:-:1258259..1259412
Molecular Weight (calculated)
34779.0 Da
IEP (calculated)
6.883
GRAVY (calculated)
-0.858
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNETKDLYS YQYLTSLSLY ELMNLPTSTP SSYGNNGFVP SSYPLADCFQ SSPGAAYDSL LHTTLGVSPS SSEVFNSLVD QESKHDVTND VIGETPTRVS
101: ASSSSSEADL PGEDSGKSQR KRELVGDGRE ENQSSKKVGK TKKKEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK NSIYPRSYYR CTTQRCNVKK
201: RVERSFQDPT VVITTYEGQH NHPLPTNLRG SSAAAAMYSA DFMTPGSFTH EMFRSSAYTS GGSAAAALDY GYEQSSYGSV NANPNAHQEY RQGGEYELLK
301: EIFPSIFFKQ EP
101: ASSSSSEADL PGEDSGKSQR KRELVGDGRE ENQSSKKVGK TKKKEEKKQR EPRVSFMTKS EVDHLEDGYR WRKYGQKAVK NSIYPRSYYR CTTQRCNVKK
201: RVERSFQDPT VVITTYEGQH NHPLPTNLRG SSAAAAMYSA DFMTPGSFTH EMFRSSAYTS GGSAAAALDY GYEQSSYGSV NANPNAHQEY RQGGEYELLK
301: EIFPSIFFKQ EP
001: MSNETRDLYN YQYPSSFSLH EMMNLPTSNP SSYGNLPSQN GFNPSTYSFT DCLQSSPAAY ESLLQKTFGL SPSSSEVFNS SIDQEPNRDV TNDVINGGAC
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP
101: NETETRVSPS NSSSSEADHP GEDSGKSRRK RELVGEEDQI SKKVGKTKKT EVKKQREPRV SFMTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTQ
201: KCNVKKRVER SFQDPTVVIT TYEGQHNHPI PTNLRGSSAA AAMFSADLMT PRSFAHDMFR TAAYTNGGSV AAALDYGYGQ SGYGSVNSNP SSHQVYHQGG
301: EYELLREIFP SIFFKQEP
Arabidopsis Description
WRKY28WRKY28 [Source:UniProtKB/TrEMBL;Acc:A0A178V3M3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.