Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41570.1 | CDY44897 | AT1G68450.1 | 21798944 |
| AT5G41570.1 | CDY71985 | AT1G68450.1 | 21798944 |
| AT5G41570.1 | CDX76888 | AT2G22880.1 | 21798944 |
| AT5G41570.1 | CDY49439 | AT2G22880.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025490.1-P | Field mustard | nucleus | 98.3 | 99.43 |
| CDY44466 | Canola | nucleus | 96.02 | 96.02 |
| AT5G41570.1 | Thale cress | nucleus | 82.95 | 81.56 |
| CDY34393 | Canola | nucleus | 69.32 | 64.21 |
| CDY38208 | Canola | nucleus | 67.61 | 63.98 |
| CDY25554 | Canola | nucleus | 68.18 | 63.83 |
| CDY55479 | Canola | nucleus | 66.48 | 62.9 |
| TraesCS1D01G351600.1 | Wheat | plastid | 43.75 | 57.04 |
| TraesCS1A01G348600.1 | Wheat | plastid | 43.75 | 57.04 |
| CDY72079 | Canola | nucleus | 31.25 | 49.55 |
| KRH00862 | Soybean | cytosol | 52.27 | 47.92 |
| KRH40372 | Soybean | cytosol | 50.57 | 46.35 |
| CDX97223 | Canola | nucleus | 38.07 | 45.58 |
| CDX78504 | Canola | nucleus | 38.07 | 45.58 |
| CDX70492 | Canola | nucleus | 38.07 | 45.58 |
| CDX69672 | Canola | nucleus | 37.5 | 44.9 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 43.75 | 42.78 |
| VIT_15s0046g02150.t01 | Wine grape | nucleus, plastid | 47.16 | 41.29 |
| CDX77096 | Canola | nucleus | 32.39 | 39.58 |
| PGSC0003DMT400032090 | Potato | nucleus | 49.43 | 38.16 |
| Zm00001d038761_P002 | Maize | nucleus | 46.59 | 37.61 |
| Zm00001d012789_P001 | Maize | nucleus | 48.3 | 37.44 |
| TraesCS3D01G280200.1 | Wheat | nucleus | 47.16 | 37.39 |
| Solyc08g081630.1.1 | Tomato | nucleus | 48.3 | 36.8 |
| TraesCS3A01G280400.1 | Wheat | nucleus | 46.02 | 36.49 |
| GSMUA_Achr6P22920_001 | Banana | mitochondrion | 46.59 | 36.12 |
| TraesCS1B01G363200.1 | Wheat | nucleus | 46.02 | 35.37 |
| HORVU3Hr1G069660.1 | Barley | nucleus | 46.02 | 35.06 |
| Zm00001d010805_P001 | Maize | nucleus | 45.45 | 34.93 |
| EES01425 | Sorghum | nucleus | 48.3 | 34.55 |
| EES19853 | Sorghum | nucleus, plastid | 47.16 | 34.44 |
| Os01t0734000-01 | Rice | nucleus | 47.73 | 33.07 |
| CDY05537 | Canola | nucleus | 27.27 | 28.57 |
| CDY24990 | Canola | nucleus | 27.27 | 28.4 |
| CDX83415 | Canola | nucleus, plastid | 30.11 | 28.19 |
| CDX95615 | Canola | nucleus, plastid | 30.11 | 27.89 |
| CDY18694 | Canola | nucleus | 26.7 | 27.17 |
| HORVU1Hr1G081570.1 | Barley | plastid | 45.45 | 26.14 |
| CDX88219 | Canola | nucleus | 26.14 | 26.14 |
| CDX87064 | Canola | nucleus | 25.0 | 25.73 |
| CDY48151 | Canola | nucleus | 24.43 | 25.15 |
| CDY52627 | Canola | nucleus | 25.0 | 25.0 |
| CDY71963 | Canola | nucleus | 30.11 | 24.77 |
| CDY48258 | Canola | nucleus | 30.11 | 24.65 |
| CDY30483 | Canola | nucleus | 30.68 | 24.55 |
| CDY23453 | Canola | nucleus | 30.11 | 24.31 |
| CDX81259 | Canola | nucleus | 27.27 | 24.12 |
| CDY31301 | Canola | nucleus | 25.57 | 22.84 |
| CDY14512 | Canola | nucleus | 25.57 | 21.84 |
| CDY08849 | Canola | nucleus | 25.57 | 21.84 |
| CDX72701 | Canola | nucleus | 32.39 | 20.21 |
| CDY26310 | Canola | nucleus | 30.68 | 19.78 |
| CDY43194 | Canola | nucleus | 30.68 | 19.49 |
| CDY53184 | Canola | nucleus | 32.39 | 19.45 |
| CDX99859 | Canola | nucleus | 30.11 | 19.41 |
| CDX76541 | Canola | nucleus | 32.39 | 19.39 |
| CDY08894 | Canola | nucleus | 32.39 | 19.39 |
| CDY41978 | Canola | nucleus | 32.39 | 19.13 |
| CDX98155 | Canola | nucleus | 30.68 | 19.01 |
| CDY12144 | Canola | nucleus | 31.82 | 18.98 |
| CDY04276 | Canola | nucleus | 30.68 | 18.82 |
| CDY54139 | Canola | nucleus | 31.82 | 18.79 |
| CDX95947 | Canola | nucleus | 31.25 | 18.71 |
| CDY40910 | Canola | nucleus | 31.25 | 18.71 |
| CDY07352 | Canola | nucleus | 30.68 | 18.69 |
| CDY11416 | Canola | nucleus | 31.25 | 18.46 |
| CDX76630 | Canola | nucleus | 30.68 | 18.18 |
| CDY72613 | Canola | nucleus | 32.95 | 17.96 |
| CDY37794 | Canola | nucleus | 31.82 | 17.89 |
| CDY50313 | Canola | nucleus | 30.68 | 17.48 |
| CDX80094 | Canola | nucleus | 31.25 | 17.41 |
| CDX99495 | Canola | nucleus | 30.68 | 17.31 |
| CDY01523 | Canola | nucleus | 30.68 | 17.31 |
| CDX90417 | Canola | nucleus | 30.68 | 17.25 |
| CDY09083 | Canola | nucleus | 30.68 | 17.25 |
| CDX78832 | Canola | nucleus | 30.11 | 17.21 |
| CDY51420 | Canola | nucleus | 31.25 | 16.98 |
| CDY33471 | Canola | nucleus | 30.68 | 16.72 |
| CDX87722 | Canola | nucleus | 29.55 | 16.61 |
| CDY27500 | Canola | nucleus | 31.25 | 16.52 |
| CDX77655 | Canola | nucleus | 30.11 | 16.41 |
| CDY43969 | Canola | nucleus | 29.55 | 16.4 |
| CDY35159 | Canola | nucleus | 28.41 | 15.58 |
| CDY03224 | Canola | nucleus | 28.41 | 15.58 |
| CDY46824 | Canola | nucleus | 25.0 | 15.17 |
| CDY05620 | Canola | nucleus | 33.52 | 15.09 |
| CDX85413 | Canola | nucleus | 33.52 | 14.79 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:A0A078HPF0 | UniProt:A0A078HPF0 | EnsemblPlants:CDY39732 | ProteinID:CDY39732 |
| ProteinID:CDY39732.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00068515001 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 |
| PANTHER:PTHR31221:SF7 | SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI0004EE191E | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g11210DBnaA04g11210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPF0]
Coordinates
chrLK032456:-:84574..88054
Molecular Weight (calculated)
20514.3 Da
IEP (calculated)
8.621
GRAVY (calculated)
-0.915
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MERQDIIPHT LSLDVENNNN TFSSFVDETL MMMPPLALPG QVEPSSSSWC PTSFHMPTQP HENDQIGDHG KKKDKRSRKV PRIEFHTRSD DDVLDDGYRW
101: RKYGQKSVKN NGHPRSYYRC TYHTCNVKKQ VQRLAKDPKI IVTTYEGIHN HPCEKLMETL NPLLRQLQFL SSFSNL
101: RKYGQKSVKN NGHPRSYYRC TYHTCNVKKQ VQRLAKDPKI IVTTYEGIHN HPCEKLMETL NPLLRQLQFL SSFSNL
001: MDREDINPML SRLDVENNNT FSSFVDKTLM MMPPSTFSGE VEPSSSSSWY PESFHVHAPP LPPENDQIGE KGKELKEKRS RKVPRIAFHT RSDDDVLDDG
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL
101: YRWRKYGQKS VKHNAHPRSY YRCTYHTCNV KKQVQRLAKD PNVVVTTYEG VHNHPCEKLM ETLNPLLRQL QFLSSFSNL
Arabidopsis Description
WRKY24Probable WRKY transcription factor 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.