Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G280400.1 | Wheat | nucleus | 96.4 | 96.4 |
| HORVU3Hr1G069660.1 | Barley | nucleus | 90.54 | 87.01 |
| AT2G46130.1 | Thale cress | nucleus | 34.23 | 69.72 |
| TraesCS1D01G351600.1 | Wheat | plastid | 42.34 | 69.63 |
| Zm00001d012789_P001 | Maize | nucleus | 59.01 | 57.71 |
| Os01t0734000-01 | Rice | nucleus | 64.41 | 56.3 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 43.69 | 53.89 |
| EES01425 | Sorghum | nucleus | 59.01 | 53.25 |
| VIT_15s0046g02150.t01 | Wine grape | nucleus, plastid | 48.2 | 53.23 |
| KRH40372 | Soybean | cytosol | 45.05 | 52.08 |
| KRH00862 | Soybean | cytosol | 45.05 | 52.08 |
| KRH06569 | Soybean | nucleus | 44.59 | 50.77 |
| AT5G41570.1 | Thale cress | nucleus | 38.74 | 48.04 |
| CDY44466 | Canola | nucleus | 37.84 | 47.73 |
| Bra025490.1-P | Field mustard | nucleus | 37.39 | 47.7 |
| CDY39732 | Canola | nucleus | 37.39 | 47.16 |
| CDY25554 | Canola | nucleus | 37.39 | 44.15 |
| Bra027675.1-P | Field mustard | nucleus | 37.39 | 43.92 |
| PGSC0003DMT400032090 | Potato | nucleus | 45.05 | 43.86 |
| Solyc08g081630.1.1 | Tomato | nucleus | 45.5 | 43.72 |
| CDY34393 | Canola | nucleus | 37.39 | 43.68 |
| Bra027768.1-P | Field mustard | nucleus | 36.49 | 43.32 |
| AT1G64000.1 | Thale cress | nucleus | 37.84 | 43.08 |
| CDY38208 | Canola | nucleus | 36.04 | 43.01 |
| CDY55479 | Canola | nucleus | 35.59 | 42.47 |
| TraesCS2D01G011700.1 | Wheat | nucleus | 31.98 | 34.47 |
| TraesCS1D01G122400.1 | Wheat | nucleus | 25.23 | 28.87 |
| TraesCS3D01G248500.1 | Wheat | mitochondrion | 25.68 | 27.8 |
| TraesCS2D01G390200.1 | Wheat | nucleus | 27.48 | 26.64 |
| TraesCS6D01G223900.1 | Wheat | cytosol | 27.48 | 25.85 |
| TraesCS1D01G362900.1 | Wheat | nucleus, plastid | 25.23 | 25.45 |
| TraesCS1D01G363300.1 | Wheat | plastid | 24.32 | 24.22 |
| TraesCS3D01G212700.1 | Wheat | nucleus | 25.68 | 23.85 |
| TraesCS3D01G113200.1 | Wheat | nucleus | 23.42 | 23.32 |
| TraesCS1D01G429800.1 | Wheat | nucleus | 28.83 | 22.22 |
| TraesCS2D01G262100.1 | Wheat | nucleus | 28.38 | 22.11 |
| TraesCS1D01G430000.1 | Wheat | nucleus | 29.28 | 21.96 |
| TraesCS1D01G429900.1 | Wheat | nucleus | 29.28 | 21.17 |
| TraesCS3D01G118100.1 | Wheat | nucleus, plastid | 24.32 | 20.61 |
| TraesCS5D01G404400.1 | Wheat | nucleus | 26.58 | 19.03 |
| TraesCS3D01G242500.1 | Wheat | nucleus | 31.08 | 18.85 |
| TraesCS3D01G226300.1 | Wheat | nucleus | 28.38 | 18.26 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 | PFscan:PS50811 |
| PANTHER:PTHR31221 | PANTHER:PTHR31221:SF7 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS3D01G280200 | EnsemblPlants:TraesCS3D01G280200.1 |
| InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:388437861..388442522
Molecular Weight (calculated)
24203.2 Da
IEP (calculated)
7.580
GRAVY (calculated)
-0.769
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGLHGDDEA HTFPRFPYFS APSTPPPLAS PLASSSDGQH SPLAAALQQL APPPWPCTPP DLTLQPAMGD VDWSSLFQTE LVAPPEQKEE AVQADQSGEN
101: DGEAGGSGSG NKEKAKGSAG RSGKKKASKP RFAFHTRSEN DILDDGYRWR KYGQKAVKNS SNPRSYYRCT HPTCNVKKQV QRLAKDTAIV VTTYEGVHNH
201: PCEKLMEALG PILKQLQFLS QF
101: DGEAGGSGSG NKEKAKGSAG RSGKKKASKP RFAFHTRSEN DILDDGYRWR KYGQKAVKNS SNPRSYYRCT HPTCNVKKQV QRLAKDTAIV VTTYEGVHNH
201: PCEKLMEALG PILKQLQFLS QF
001: MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
Arabidopsis Description
WRKY56At1g64000 [Source:UniProtKB/TrEMBL;Acc:Q29PS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.