Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027675.1-P | Field mustard | nucleus | 82.56 | 85.19 |
| CDY25554 | Canola | nucleus | 82.05 | 85.11 |
| Bra027768.1-P | Field mustard | nucleus | 81.54 | 85.03 |
| CDY34393 | Canola | nucleus | 82.56 | 84.74 |
| CDY38208 | Canola | nucleus | 80.51 | 84.41 |
| CDY55479 | Canola | nucleus | 80.51 | 84.41 |
| AT5G41570.1 | Thale cress | nucleus | 66.15 | 72.07 |
| AT2G46130.1 | Thale cress | nucleus | 36.41 | 65.14 |
| TraesCS1D01G351600.1 | Wheat | plastid | 40.51 | 58.52 |
| TraesCS1A01G348600.1 | Wheat | plastid | 40.51 | 58.52 |
| AT5G13080.1 | Thale cress | nucleus, plastid | 36.92 | 49.66 |
| GSMUA_Achr7P24780_001 | Banana | nucleus | 42.56 | 46.11 |
| KRH00862 | Soybean | cytosol | 45.13 | 45.83 |
| KRH40372 | Soybean | cytosol | 43.59 | 44.27 |
| VIT_15s0046g02150.t01 | Wine grape | nucleus, plastid | 45.13 | 43.78 |
| AT3G01970.1 | Thale cress | nucleus | 31.79 | 42.18 |
| Zm00001d038761_P002 | Maize | nucleus | 43.59 | 38.99 |
| Zm00001d012789_P001 | Maize | nucleus | 44.62 | 38.33 |
| Zm00001d010805_P001 | Maize | nucleus | 44.62 | 37.99 |
| TraesCS3D01G280200.1 | Wheat | nucleus | 43.08 | 37.84 |
| PGSC0003DMT400032090 | Potato | nucleus | 44.1 | 37.72 |
| TraesCS3A01G280400.1 | Wheat | nucleus | 42.05 | 36.94 |
| Solyc08g081630.1.1 | Tomato | nucleus | 43.59 | 36.8 |
| EES01425 | Sorghum | nucleus | 46.15 | 36.59 |
| TraesCS1B01G363200.1 | Wheat | nucleus | 42.56 | 36.24 |
| EES19853 | Sorghum | nucleus, plastid | 44.62 | 36.1 |
| GSMUA_Achr6P22920_001 | Banana | mitochondrion | 41.54 | 35.68 |
| HORVU3Hr1G069660.1 | Barley | nucleus | 42.05 | 35.5 |
| Os01t0734000-01 | Rice | nucleus | 44.1 | 33.86 |
| AT5G26170.1 | Thale cress | nucleus | 25.64 | 28.9 |
| HORVU1Hr1G081570.1 | Barley | plastid | 43.08 | 27.45 |
| AT2G44745.1 | Thale cress | nucleus | 28.72 | 25.69 |
| AT5G64810.1 | Thale cress | nucleus | 24.1 | 24.23 |
| AT1G29860.1 | Thale cress | nucleus | 28.21 | 19.5 |
| AT3G62340.1 | Thale cress | nucleus | 27.18 | 19.13 |
| AT1G69310.2 | Thale cress | nucleus | 27.69 | 18.82 |
| AT4G39410.1 | Thale cress | nucleus | 29.23 | 18.75 |
| AT4G18170.1 | Thale cress | nucleus | 27.69 | 16.98 |
| AT2G47260.1 | Thale cress | nucleus | 29.23 | 16.91 |
| AT5G46350.1 | Thale cress | nucleus | 27.18 | 16.26 |
| AT5G49520.1 | Thale cress | nucleus | 30.77 | 15.04 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | EntrezGene:842703 | ProteinID:AAF24572.1 | ProteinID:AEE34179.1 | ArrayExpress:AT1G64000 |
| EnsemblPlantsGene:AT1G64000 | RefSeq:AT1G64000 | TAIR:AT1G64000 | RefSeq:AT1G64000-TAIR-G | EnsemblPlants:AT1G64000.1 | TAIR:AT1G64000.1 |
| EMBL:AY071848 | EMBL:AY088461 | Unigene:At.36060 | EMBL:BT024835 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | RefSeq:NP_176583.1 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF7 | UniProt:Q29PS1 | UniProt:Q8VWQ4 |
| SMART:SM00774 | SUPFAM:SSF118290 | UniParc:UPI000009DDEA | Symbol:WRKY56 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
WRKY56At1g64000 [Source:UniProtKB/TrEMBL;Acc:Q29PS1]
Coordinates
chr1:+:23747304..23749053
Molecular Weight (calculated)
21775.6 Da
IEP (calculated)
8.218
GRAVY (calculated)
-0.772
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.