Factsheet for GSMUA_Achr6P22920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46130.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT2G46130.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT2G46130.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G46130.1	Thale cress	nucleus	35.68	74.31
KRH40372	Soybean	cytosol	47.58	56.25
KRH00862	Soybean	cytosol	47.14	55.73
GSMUA_Achr9P07230_001	Banana	mitochondrion	28.19	55.65
GSMUA_Achr7P24780_001	Banana	nucleus	43.17	54.44
VIT_15s0046g02150.t01	Wine grape	nucleus, plastid	46.26	52.24
KRH06569	Soybean	nucleus	44.05	51.28
GSMUA_Achr4P17890_001	Banana	nucleus	24.23	49.11
Bra025490.1-P	Field mustard	nucleus	36.12	47.13
GSMUA_Achr7P06860_001	Banana	nucleus	24.23	47.01
GSMUA_Achr5P06260_001	Banana	nucleus	21.15	46.6
CDY44466	Canola	nucleus	36.12	46.59
CDY39732	Canola	nucleus	36.12	46.59
AT5G41570.1	Thale cress	nucleus	36.12	45.81
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	18.06	43.62
CDY34393	Canola	nucleus	36.12	43.16
GSMUA_Achr9P01400_001	Banana	nucleus	34.36	43.09
CDY25554	Canola	nucleus	35.68	43.09
Bra027675.1-P	Field mustard	nucleus	35.68	42.86
Bra027768.1-P	Field mustard	nucleus	35.24	42.78
GSMUA_Achr9P29350_001	Banana	nucleus	29.96	42.77
CDY38208	Canola	nucleus	34.8	42.47
CDY55479	Canola	nucleus	34.36	41.94
GSMUA_AchrUn_...	Banana	nucleus	32.6	41.81
AT1G64000.1	Thale cress	nucleus	35.68	41.54
PGSC0003DMT400032090	Potato	nucleus	40.97	40.79
Solyc08g081630.1.1	Tomato	nucleus	40.97	40.26
GSMUA_Achr6P06360_001	Banana	nucleus	31.28	38.59
GSMUA_Achr7P00580_001	Banana	cytosol, nucleus, plastid	22.03	33.56
GSMUA_Achr6P34870_001	Banana	nucleus	21.59	33.11
GSMUA_Achr4P08880_001	Banana	nucleus	23.35	32.12
GSMUA_Achr8P26240_001	Banana	nucleus	22.91	30.23
GSMUA_Achr7P23980_001	Banana	mitochondrion	21.59	28.99
GSMUA_Achr3P31310_001	Banana	nucleus	24.67	24.45
GSMUA_Achr4P23360_001	Banana	nucleus	26.87	23.28
GSMUA_Achr7P09680_001	Banana	nucleus	20.7	23.27
GSMUA_Achr7P13310_001	Banana	nucleus	23.35	22.27
GSMUA_AchrUn_...	Banana	nucleus	27.31	21.53
GSMUA_Achr6P27090_001	Banana	nucleus	28.19	21.33
GSMUA_Achr8P10740_001	Banana	nucleus	29.07	21.09
GSMUA_AchrUn_...	Banana	nucleus	27.75	20.93
GSMUA_Achr10P...	Banana	nucleus	24.67	20.36
GSMUA_Achr1P04770_001	Banana	nucleus	25.99	19.93
GSMUA_Achr4P02800_001	Banana	nucleus	27.31	18.84
GSMUA_Achr7P25400_001	Banana	nucleus	26.87	18.71
GSMUA_Achr4P14990_001	Banana	nucleus	26.43	18.07
GSMUA_Achr6P22160_001	Banana	nucleus	26.43	17.09
GSMUA_Achr9P06750_001	Banana	nucleus	21.59	16.61
GSMUA_Achr4P07920_001	Banana	nucleus	26.43	12.32

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr6G22920_001	EnsemblPlants:GSMUA_Achr6P22920_001	EnsemblPlants:GSMUA_Achr6T22920_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0T9E0	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF7	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000296469A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Probable WRKY transcription factor 43 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22920_001]

Coordinates

chr6:+:22026254..22029177

Molecular Weight (calculated)

24988.9 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.575

Length

227 amino acids

Sequence
(BLAST)

001: MLWLTRPQPL PNSQTLSPPI LSSINHPCVA LMQQSSMESL EDEEQAQLAP PASGSTLCPP PYVGQPAPFP PPELTWGVDL GSLFQVLQQQ QQQAAAAPMA
101: VTELTVGRGS GSGAGGDREK GKGGSGGREK KVGRPRFAFQ TKSPNDILDD GYRWRKYGQK AVKNSAYPRS YYRCTHHTCN VKKQVQRLSK DTSIVVTTYE
201: GIHNHPCEKL MEALTPLLKQ IQFLTRF

Best Arabidopsis Sequence Match ( AT2G46130.1 )
(BLAST)

001: MNGLVDSSRD KKMKNPRFSF RTKSDADILD DGYRWRKYGQ KSVKNSLYPR SYYRCTQHMC NVKKQVQRLS KETSIVETTY EGIHNHPCEE LMQTLTPLLH
101: QLQFLSKFT

Arabidopsis Description

WRKY43Probable WRKY transcription factor 43 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.