Factsheet for GSMUA_Achr10P27340_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06260_001	Banana	nucleus	29.09	77.67
CDY72079	Canola	nucleus	28.73	71.17
GSMUA_Achr4P17890_001	Banana	nucleus	25.45	62.5
GSMUA_Achr7P06860_001	Banana	nucleus	24.73	58.12
GSMUA_Achr7P13310_001	Banana	nucleus	42.91	49.58
VIT_07s0031g01840.t01	Wine grape	nucleus	40.36	49.12
KRH64133	Soybean	nucleus	39.64	46.58
KRH53810	Soybean	nucleus	39.64	46.19
KRH43340	Soybean	nucleus	38.55	45.11
PGSC0003DMT400050745	Potato	nucleus	38.18	44.87
Solyc04g051540.2.1	Tomato	nucleus	37.45	44.02
GSMUA_Achr3P20450_001	Banana	cytosol, nucleus, plastid	14.91	43.62
KRH59476	Soybean	nucleus	34.18	43.52
TraesCS3A01G116200.1	Wheat	plastid	38.18	40.08
TraesCS3D01G118100.1	Wheat	nucleus, plastid	37.82	39.69
HORVU3Hr1G021120.1	Barley	nucleus, plastid	37.82	39.39
TraesCS3B01G135300.1	Wheat	nucleus, plastid	37.82	39.25
Os01t0182700-01	Rice	nucleus	39.27	38.57
GSMUA_Achr9P07230_001	Banana	mitochondrion	16.0	38.26
OQU86187	Sorghum	mitochondrion, nucleus	38.55	35.93
Zm00001d039584_P001	Maize	nucleus	38.18	35.84
Bra010683.1-P	Field mustard	nucleus	38.18	35.47
CDY12144	Canola	nucleus	37.82	35.25
CDY41978	Canola	nucleus	36.73	33.89
Bra011861.1-P	Field mustard	nucleus	36.73	33.89
CDX72701	Canola	nucleus	34.55	33.69
CDY53184	Canola	nucleus	35.27	33.11
AT4G39410.1	Thale cress	nucleus	36.36	32.89
Bra033616.1-P	Field mustard	nucleus	34.91	32.88
GSMUA_Achr9P29350_001	Banana	nucleus	18.18	31.45
GSMUA_Achr7P00580_001	Banana	cytosol, nucleus, plastid	16.36	30.2
GSMUA_AchrUn_...	Banana	nucleus	19.27	29.94
GSMUA_Achr6P06360_001	Banana	nucleus	20.0	29.89
GSMUA_Achr9P01400_001	Banana	nucleus	19.64	29.83
GSMUA_Achr6P34870_001	Banana	nucleus	16.0	29.73
GSMUA_Achr7P24780_001	Banana	nucleus	18.91	28.89
GSMUA_Achr4P08880_001	Banana	nucleus	16.73	27.88
GSMUA_Achr7P23980_001	Banana	mitochondrion	16.36	26.63
GSMUA_Achr3P31310_001	Banana	nucleus	21.09	25.33
GSMUA_Achr8P26240_001	Banana	nucleus	15.64	25.0
GSMUA_Achr6P22920_001	Banana	mitochondrion	20.36	24.67
GSMUA_Achr7P09680_001	Banana	nucleus	16.73	22.77
GSMUA_Achr6P27090_001	Banana	nucleus	24.0	22.0
GSMUA_Achr8P10740_001	Banana	nucleus	24.0	21.09
GSMUA_Achr1P04770_001	Banana	nucleus	21.82	20.27
GSMUA_AchrUn_...	Banana	nucleus	22.18	20.27
GSMUA_Achr4P23360_001	Banana	nucleus	18.91	19.85
GSMUA_AchrUn_...	Banana	nucleus	20.36	19.44
GSMUA_Achr7P25400_001	Banana	nucleus	22.91	19.33
GSMUA_Achr4P14990_001	Banana	nucleus	23.27	19.28
GSMUA_Achr4P02800_001	Banana	nucleus	22.18	18.54
GSMUA_Achr6P22160_001	Banana	nucleus	23.27	18.23
GSMUA_Achr9P06750_001	Banana	nucleus	19.27	17.97
GSMUA_Achr4P07920_001	Banana	nucleus	22.18	12.53

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr10G27340_001	EnsemblPlants:GSMUA_Achr10P27340_001	EnsemblPlants:GSMUA_Achr10T27340_001	InterPro:IPR003657	InterPro:IPR036576
UniProt:M0RLV8	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF47	SMART:SM00774
SUPFAM:SSF118290	UniParc:UPI000294FBE5	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G27340_001]

Coordinates

chr10:-:30539466..30542202

Molecular Weight (calculated)

30670.8 Da

IEP (calculated)

10.416

GRAVY (calculated)

-0.737

Length

275 amino acids

Sequence
(BLAST)

001: MSSVLATFRR LQKGLCSSHG LSYLTPHSLV PCEVGRDQEE MFQPATACGV LLNQGWVGSP EIMVTSHMGF DLRASPPPPL LGSPCFAGGG GGVAASHPRG
101: NLLPFPTKHG DGNRPAQLGA SSSSNVRPWP EEDALNKKEL LAGNKKKKKK KKKNSFVGNE NMVSNLSIGA TRKKKLKVRK KLREPRFCFK TMSDVDVLDD
201: GYKWRKYGQK VVKDTQHPRS YYRCTQGDCR VKKRIERLAE DPRMVITTYE GRHAHSPSHH EEESQASSKL NLFWQ

Best Arabidopsis Sequence Match ( AT4G39410.1 )
(BLAST)

001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW

Arabidopsis Description

WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.