Factsheet for Os01t0182700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 18022940

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P06260_001	Banana	nucleus	30.36	82.52
CDY72079	Canola	nucleus	29.29	73.87
TraesCS3A01G116200.1	Wheat	plastid	64.29	68.7
TraesCS3B01G135300.1	Wheat	nucleus, plastid	64.29	67.92
TraesCS3D01G118100.1	Wheat	nucleus, plastid	63.21	67.56
HORVU3Hr1G021120.1	Barley	nucleus, plastid	63.57	67.42
Zm00001d039584_P001	Maize	nucleus	67.5	64.51
OQU86187	Sorghum	mitochondrion, nucleus	66.79	63.39
VIT_07s0031g01840.t01	Wine grape	nucleus	40.71	50.44
GSMUA_Achr7P13310_001	Banana	nucleus	41.43	48.74
KRH43340	Soybean	nucleus	40.71	48.51
KRH64133	Soybean	nucleus	40.0	47.86
KRH53810	Soybean	nucleus	39.64	47.03
PGSC0003DMT400050745	Potato	nucleus	38.93	46.58
KRH59476	Soybean	nucleus	35.71	46.3
Solyc04g051540.2.1	Tomato	nucleus	38.21	45.73
GSMUA_Achr10P...	Banana	nucleus	38.57	39.27
CDX72701	Canola	nucleus	38.21	37.94
Bra010683.1-P	Field mustard	nucleus	39.64	37.5
CDY12144	Canola	nucleus	39.29	37.29
CDY53184	Canola	nucleus	38.93	37.2
Bra033616.1-P	Field mustard	nucleus	38.57	36.99
CDY41978	Canola	nucleus	38.57	36.24
Bra011861.1-P	Field mustard	nucleus	38.57	36.24
AT4G39410.1	Thale cress	nucleus	39.29	36.18
Os04t0545000-01	Rice	cytosol	31.07	34.8
Os02t0652100-01	Rice	extracellular, mitochondrion, nucleus	15.71	26.99
Os05t0183100-01	Rice	nucleus	19.64	25.94
Os05t0537100-00	Rice	cytosol, plastid	20.0	25.34
Os11t0490900-01	Rice	nucleus	20.71	23.97
Os01t0186000-01	Rice	cytosol, nucleus	16.43	23.83
Os01t0734000-01	Rice	nucleus	21.43	23.62
Os03t0758000-01	Rice	nucleus, plastid	18.93	22.94
Os01t0584900-01	Rice	nucleus	19.64	22.36
Os01t0714800-01	Rice	plastid	18.21	20.82
Os07t0111400-00	Rice	nucleus	21.07	20.34
Os05t0583000-01	Rice	nucleus	22.14	18.4
Os01t0626400-01	Rice	nucleus	22.5	16.62
Os05t0565900-00	Rice	nucleus	21.79	14.56
Os01t0665500-00	Rice	plastid	0.71	1.75

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:4325330	EMBL:AK108755	UniProt:B7F1L8	ProteinID:BAS70744.1
ProteinID:EEE54001.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EnsemblPlantsGene:Os01g0182700	EnsemblPlants:Os01t0182700-01
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF47	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI000188AEDF	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_015632233.1	SEG:seg	:

Description

WRKY GENE 102Similar to WRKY12. (Os01t0182700-01)

Coordinates

chr1:-:4347188..4356468

Molecular Weight (calculated)

29829.0 Da

IEP (calculated)

10.230

GRAVY (calculated)

-0.681

Length

280 amino acids

Sequence
(BLAST)

001: MFPSPGRAVM ALGHHGAARQ PPTTMAAAAS SSTTSAAAAP ATATTTVAFS FQHPTPTPSH HHHHHGVLGY SPLVLDHHHP TTAAASSHAP SPPTLHHHHG
101: GGLHAAAPPP RSSPPHPWSC EEGDHRGRPQ MGNKGEAAAA MGAMGINDAG NNTAAAAAAQ HHLGVGAVRM KKVGGGGGGG GKARRKVREP RFCFKTMSDV
201: DVLDDGYKWR KYGQKVVKNT QHPRSYYRCT QDNCRVKKRV ERLAEDPRMV ITTYEGRHVH SPSRDDDDAA RASAEMTFIW

Best Arabidopsis Sequence Match ( AT4G39410.1 )
(BLAST)

001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW

Arabidopsis Description

WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.