CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011861.1-P	Field mustard	nucleus	100.0	100.0
CDY72079	Canola	nucleus	34.56	92.79
CDY53184	Canola	nucleus	79.19	80.55
CDX72701	Canola	nucleus	76.17	80.5
CDY12144	Canola	nucleus	77.85	78.64
AT4G39410.1	Thale cress	nucleus	78.19	76.64
GSMUA_Achr5P06260_001	Banana	nucleus	25.84	74.76
VIT_07s0031g01840.t01	Wine grape	nucleus	40.94	53.98
KRH43340	Soybean	nucleus	41.95	53.19
Solyc04g051540.2.1	Tomato	nucleus	40.6	51.71
KRH59476	Soybean	nucleus	37.25	51.39
PGSC0003DMT400050745	Potato	nucleus	40.27	51.28
KRH53810	Soybean	nucleus	40.6	51.27
KRH64133	Soybean	nucleus	39.93	50.85
CDX83415	Canola	nucleus, plastid	31.88	50.53
CDX95615	Canola	nucleus, plastid	31.88	50.0
GSMUA_Achr7P13310_001	Banana	nucleus	35.57	44.54
CDY48258	Canola	nucleus	31.88	44.19
CDY71963	Canola	nucleus	31.54	43.93
CDY23453	Canola	nucleus	31.54	43.12
CDY30483	Canola	nucleus	31.54	42.73
TraesCS3A01G116200.1	Wheat	plastid	36.24	41.22
TraesCS3D01G118100.1	Wheat	nucleus, plastid	35.57	40.46
TraesCS3B01G135300.1	Wheat	nucleus, plastid	35.57	40.0
HORVU3Hr1G021120.1	Barley	nucleus, plastid	35.23	39.77
Os01t0182700-01	Rice	nucleus	36.24	38.57
GSMUA_Achr10P...	Banana	nucleus	33.89	36.73
CDX77096	Canola	nucleus	17.45	36.11
Zm00001d039584_P001	Maize	nucleus	35.23	35.84
OQU86187	Sorghum	mitochondrion, nucleus	34.56	34.92
CDX78504	Canola	nucleus	17.11	34.69
CDX97223	Canola	nucleus	17.11	34.69
CDY24990	Canola	nucleus	19.46	34.32
CDX69672	Canola	nucleus	16.78	34.01
CDX70492	Canola	nucleus	16.78	34.01
CDY05537	Canola	nucleus	18.79	33.33
CDY44466	Canola	nucleus	19.13	32.39
CDY39732	Canola	nucleus	19.13	32.39
CDX87064	Canola	nucleus	18.46	32.16
CDY48151	Canola	nucleus	18.12	31.58
CDX88219	Canola	nucleus	18.12	30.68
CDY52627	Canola	nucleus	18.12	30.68
CDY38208	Canola	nucleus	19.13	30.65
CDY34393	Canola	nucleus	19.13	30.0
CDY55479	Canola	nucleus	18.46	29.57
CDY25554	Canola	nucleus	18.46	29.26
CDY18694	Canola	nucleus	16.78	28.9
CDY14512	Canola	nucleus	17.79	25.73
CDY08849	Canola	nucleus	17.79	25.73
CDX76541	Canola	nucleus	25.17	25.51
CDY31301	Canola	nucleus	16.44	24.87
CDY08894	Canola	nucleus	24.5	24.83
CDX81259	Canola	nucleus	16.44	24.62
CDX90417	Canola	nucleus	25.5	24.28
CDY09083	Canola	nucleus	25.5	24.28
CDY01523	Canola	nucleus	25.17	24.04
CDY43194	Canola	nucleus	22.15	23.83
CDX99495	Canola	nucleus	24.83	23.72
CDX78832	Canola	nucleus	24.5	23.7
CDX99859	Canola	nucleus	21.48	23.44
CDY26310	Canola	nucleus	21.48	23.44
CDX98155	Canola	nucleus	22.15	23.24
CDY03224	Canola	nucleus	24.5	22.74
CDY40910	Canola	nucleus	22.15	22.45
CDY35159	Canola	nucleus	24.16	22.43
CDY37794	Canola	nucleus	23.49	22.36
CDY04276	Canola	nucleus	21.48	22.3
CDY33471	Canola	nucleus	24.16	22.29
CDX80094	Canola	nucleus	23.49	22.15
CDY07352	Canola	nucleus	21.48	22.15
CDX95947	Canola	nucleus	21.81	22.11
CDX77655	Canola	nucleus	23.83	21.98
CDY54139	Canola	nucleus	21.81	21.81
CDY43969	Canola	nucleus	23.15	21.77
CDY72613	Canola	nucleus	23.49	21.67
CDY11416	Canola	nucleus	21.14	21.14
CDX76630	Canola	nucleus	20.81	20.88
CDX87722	Canola	nucleus	21.81	20.77
CDY50313	Canola	nucleus	20.81	20.06
CDY51420	Canola	nucleus	21.14	19.44
CDY27500	Canola	nucleus	20.81	18.62
CDY05620	Canola	nucleus	23.83	18.16
CDX85413	Canola	nucleus	23.49	17.54
CDY46824	Canola	nucleus	15.44	15.86

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	GO:A0A078HZ29	UniProt:A0A078HZ29	EnsemblPlants:CDY41978	ProteinID:CDY41978
ProteinID:CDY41978.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00073974001	InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221
PANTHER:PTHR31221:SF47	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002545E8E	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaA01g05500DBnaA01g05500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZ29]

Coordinates

chrLK032511:-:150532..152725

Molecular Weight (calculated)

33887.5 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.846

Length

298 amino acids

Sequence
(BLAST)

001: MGTINQGISL YDEPQNIINP NSNHLGFFLS FPNQTLSSSS SSSSPSLASS FLVHHSLNSF LQNNPPSFLT HPQDPINSMA NLPETLVSIY SLSSSKQKDA
101: HDGIVNLDHH RLTGGISSQR PSLNQWAGSC QAEYGYSKKN NHGSEIHVYD IDDDVGNGGR INDDEDHDQH SDTLRRHKRN AMPVGVGCTL KMKKLKTRRK
201: VREPRFCFKT LSDVDVLDDG YRWRKYGQKV VKNTQHPRSY YRCTQNKCRV KKRVERLADD PRMVITTYEG RHLHPPSNHL DDDSLSFSHH SPLSNFFW

Best Arabidopsis Sequence Match ( AT4G39410.1 )
(BLAST)

001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW

Arabidopsis Description

WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.