Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039584_P001 | Maize | nucleus | 86.78 | 87.37 |
| GSMUA_Achr5P06260_001 | Banana | nucleus | 27.8 | 79.61 |
| TraesCS3B01G135300.1 | Wheat | nucleus, plastid | 66.1 | 73.58 |
| CDY72079 | Canola | nucleus | 27.46 | 72.97 |
| TraesCS3A01G116200.1 | Wheat | plastid | 63.73 | 71.76 |
| HORVU3Hr1G021120.1 | Barley | nucleus, plastid | 64.07 | 71.59 |
| TraesCS3D01G118100.1 | Wheat | nucleus, plastid | 61.69 | 69.47 |
| Os01t0182700-01 | Rice | nucleus | 63.39 | 66.79 |
| GSMUA_Achr7P13310_001 | Banana | nucleus | 38.64 | 47.9 |
| VIT_07s0031g01840.t01 | Wine grape | nucleus | 36.61 | 47.79 |
| KRH64133 | Soybean | nucleus | 36.61 | 46.15 |
| KRH43340 | Soybean | nucleus | 36.27 | 45.53 |
| KRH59476 | Soybean | nucleus | 33.22 | 45.37 |
| KRH53810 | Soybean | nucleus | 36.27 | 45.34 |
| PGSC0003DMT400050745 | Potato | nucleus | 35.25 | 44.44 |
| Solyc04g051540.2.1 | Tomato | nucleus | 33.9 | 42.73 |
| GSMUA_Achr10P... | Banana | nucleus | 35.93 | 38.55 |
| KXG31104 | Sorghum | nucleus | 29.49 | 36.55 |
| CDY53184 | Canola | nucleus | 35.25 | 35.49 |
| Bra033616.1-P | Field mustard | nucleus | 34.92 | 35.27 |
| Bra011861.1-P | Field mustard | nucleus | 34.92 | 34.56 |
| CDY41978 | Canola | nucleus | 34.92 | 34.56 |
| AT4G39410.1 | Thale cress | nucleus | 35.59 | 34.54 |
| Bra010683.1-P | Field mustard | nucleus | 34.58 | 34.46 |
| CDX72701 | Canola | nucleus | 32.88 | 34.4 |
| CDY12144 | Canola | nucleus | 34.24 | 34.24 |
| KXG26824 | Sorghum | nucleus | 30.51 | 33.46 |
| EES08501 | Sorghum | nucleus | 20.34 | 26.67 |
| EES19157 | Sorghum | nucleus | 17.63 | 25.24 |
| EES18577 | Sorghum | plastid | 18.31 | 24.66 |
| EES00970 | Sorghum | nucleus | 17.97 | 24.54 |
| EES19853 | Sorghum | nucleus, plastid | 19.66 | 24.07 |
| KXG33244 | Sorghum | plastid | 17.97 | 23.56 |
| EES01425 | Sorghum | nucleus | 18.31 | 21.95 |
| EES00157 | Sorghum | nucleus | 18.64 | 21.15 |
| OQU78504 | Sorghum | nucleus | 18.31 | 20.61 |
| KXG34273 | Sorghum | mitochondrion | 18.64 | 20.22 |
| EER90854 | Sorghum | nucleus | 20.34 | 18.13 |
| EES01107 | Sorghum | nucleus | 22.03 | 18.01 |
| EES03393 | Sorghum | nucleus | 22.37 | 16.1 |
| EES18690 | Sorghum | nucleus | 22.37 | 15.57 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | UniProt:A0A1W0VVM2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | EnsemblPlants:OQU86187 | ProteinID:OQU86187 |
| ProteinID:OQU86187.1 | PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31221 | PANTHER:PTHR31221:SF47 | SMART:SM00774 |
| EnsemblPlantsGene:SORBI_3003G040800 | SUPFAM:SSF118290 | UniParc:UPI0009DC88CB | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr3:+:3787973..3794918
Molecular Weight (calculated)
30740.9 Da
IEP (calculated)
10.230
GRAVY (calculated)
-0.570
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPSPGRTVM ALGHGGQHMT SSSTAGAAGG MAAASSSSTP TITFAFQPSP PPTSGLALAH HGVLGYGSSS LLLDHHHHPT TTTTSSAASS SHAASSITLH
101: HHLHGHAAAA APHASLSPPT RASPPPHPWS TTTTACEEAG GPAPAHDRQA GQQGGRPPRG KGAAAVISEG SAAAALGVGA VRMKKAGGGG GGGGGKARRK
201: VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSRDD DDDAARANAE MSFIW
101: HHLHGHAAAA APHASLSPPT RASPPPHPWS TTTTACEEAG GPAPAHDRQA GQQGGRPPRG KGAAAVISEG SAAAALGVGA VRMKKAGGGG GGGGGKARRK
201: VREPRFCFKT MSDVDVLDDG YKWRKYGQKV VKNTQHPRSY YRCTQDNCRV KKRVERLAED PRMVITTYEG RHVHSPSRDD DDDAARANAE MSFIW
001: MGAINQGISL FDESQTVINP INTNHLGFFF SFPSHSTLSS SSSSSSSSPS SLVSPFLGHN SLNSFLHNNP SSFISHPQDS INLMTNLPET LISSLSSSKQ
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW
101: RDDHDGFLNL DHHRLTGSIS SQRPLSNPWA WSCQAGYGSS QKNNHGSEID VDDNDDEVGD GGGINDDDNG RHHHHDTPSR HDKHNTASLG VVSSLKMKKL
201: KTRRKVREPR FCFKTLSEVD VLDDGYRWRK YGQKVVKNTQ HPRSYYRCTQ DKCRVKKRVE RLADDPRMVI TTYEGRHLHS PSNHLDDDSL STSHLHPPLS
301: NFFW
Arabidopsis Description
WRKY13WRKY13 [Source:UniProtKB/TrEMBL;Acc:A0A178UV80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.