CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043950_P001	Maize	nucleus	80.49	86.61
Zm00001d011527_P001	Maize	nucleus	78.05	77.29
TraesCS3D01G242500.1	Wheat	nucleus	58.78	65.85
TraesCS3B01G270500.1	Wheat	nucleus	58.05	64.67
TraesCS3A01G242500.1	Wheat	nucleus	57.56	64.66
HORVU3Hr1G060500.1	Barley	nucleus	56.83	64.01
EES18690	Sorghum	nucleus	52.44	50.71
GSMUA_Achr3P31310_001	Banana	nucleus	28.29	50.66
GSMUA_Achr6P22160_001	Banana	nucleus	34.63	40.46
OQU78504	Sorghum	nucleus	25.61	40.08
GSMUA_Achr1P04770_001	Banana	nucleus	28.29	39.19
EES01107	Sorghum	nucleus	34.15	38.78
GSMUA_Achr7P25400_001	Banana	nucleus	30.24	38.04
Solyc02g071130.2.1	Tomato	nucleus	28.54	36.91
PGSC0003DMT400025113	Potato	nucleus	28.54	36.79
GSMUA_Achr4P14990_001	Banana	nucleus	28.78	35.54
KXG34273	Sorghum	mitochondrion	23.17	34.93
GSMUA_Achr4P02800_001	Banana	nucleus	27.8	34.65
EER90854	Sorghum	nucleus	27.32	33.84
EES08501	Sorghum	nucleus	18.29	33.33
EES19853	Sorghum	nucleus, plastid	17.07	29.05
KXG31104	Sorghum	nucleus	16.34	28.15
GSMUA_Achr4P07920_001	Banana	nucleus	32.93	27.72
EES01425	Sorghum	nucleus	16.34	27.24
EES18577	Sorghum	plastid	14.39	26.94
EES19157	Sorghum	nucleus	13.17	26.21
EES00970	Sorghum	nucleus	13.66	25.93
KXG26824	Sorghum	nucleus	15.85	24.16
KXG33244	Sorghum	plastid	13.17	24.0
EES00157	Sorghum	nucleus	14.88	23.46
OQU86187	Sorghum	mitochondrion, nucleus	16.1	22.37

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8061826	UniProt:C5XFY7	EnsemblPlants:EES03393	ProteinID:EES03393
ProteinID:EES03393.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF83
SMART:SM00774	EnsemblPlantsGene:SORBI_3003G248400	SUPFAM:SSF118290	unigene:Sbi.10494	UniParc:UPI0001A8517B	InterPro:WRKY_dom
InterPro:WRKY_dom_sf	RefSeq:XP_002458273.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58718991..58722963

Molecular Weight (calculated)

42368.8 Da

IEP (calculated)

7.799

GRAVY (calculated)

-0.567

Length

410 amino acids

Sequence
(BLAST)

001: MSSGDFHFHD ELASLFAQRP AAPGEMMMAQ QQQQQQQAPA SWFADYLHGA GVPGMGGMDY DLLCRALDLP LPGDDVVKRE LLVVDTGGGG GGLGFAAPTP
101: SGGGTAPVTP NTTSSMSSSS SEAAGGGAAG GGGGGSFGGA GEEDSPHQGR CKKEEGDGEE SKALDKGEED ADKGKKGSPA AAKGKGKGEK RQRQPRFAFM
201: TKSEVDHLED GYRWRKYGQK AVKNSPYPRS YYRCTTQKCP VKKRVERSYQ DPAVVITTYE GKHTHPIPAT LRGSTHLLAA QLHGGHHHHH HLGGAFPPPA
301: PLPQQMAGAP FGRAGGGGGG VIDMLGLLPP RNNNHAAMPP AIGLASSRGM SGGGPMSTVA GATAATAAAT TTSSSSPPSL QMQHFMAQDF GLLQDMLPSF
401: VHGNGGNVQP

Best Arabidopsis Sequence Match ( AT1G29860.1 )
(BLAST)

001: MDDHVEHNYN TSLEEVHFKS LSDCLQSSLV MDYNSLEKVF KFSPYSSPFQ SVSPSVNNPY LNLTSNSPVV SSSSNEGEPK ENTNDKSDQM EDNEGDLHGV
101: GESSKQLTKQ GKKKGEKKER EVRVAFMTKS EIDHLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCNVKK RVERSFQDPS IVITTYEGKH NHPIPSTLRG
201: TVAAEHLLVH RGGGGSLLHS FPRHHQDFLM MKHSPANYQS VGSLSYEHGH GTSSYNFNNN QPVVDYGLLQ DIVPSMFSKN ES

Arabidopsis Description

WRKY71Probable WRKY transcription factor 71 [Source:UniProtKB/Swiss-Prot;Acc:Q93WV4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.