CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049173_P001	Maize	nucleus	80.0	78.6
HORVU2Hr1G001780.1	Barley	nucleus	57.33	65.82
TraesCS2A01G011000.1	Wheat	nucleus	59.56	65.37
TraesCS2D01G011700.1	Wheat	nucleus	58.22	63.59
TraesCS2B01G010500.1	Wheat	nucleus	57.78	63.41
Solyc02g094270.1.1	Tomato	nucleus	35.56	61.07
PGSC0003DMT400052057	Potato	nucleus	37.78	60.28
GSMUA_Achr9P29350_001	Banana	nucleus	42.22	59.75
GSMUA_AchrUn_...	Banana	nucleus	46.22	58.76
GSMUA_Achr9P01400_001	Banana	nucleus	47.11	58.56
VIT_17s0000g01280.t01	Wine grape	nucleus	37.33	55.63
Os11t0490900-01	Rice	nucleus	58.67	54.55
GSMUA_Achr6P06360_001	Banana	nucleus	43.56	53.26
KRH41119	Soybean	nucleus	34.22	52.38
KRH54160	Soybean	nucleus	30.67	43.12
EES19853	Sorghum	nucleus, plastid	37.33	34.85
EES01425	Sorghum	nucleus	32.89	30.08
KXG31104	Sorghum	nucleus	28.0	26.47
EES19157	Sorghum	nucleus	23.56	25.73
EES18577	Sorghum	plastid	24.89	25.57
KXG26824	Sorghum	nucleus	28.44	23.79
EES00970	Sorghum	nucleus	22.67	23.61
KXG33244	Sorghum	plastid	23.56	23.56
OQU78504	Sorghum	nucleus	24.89	21.37
KXG34273	Sorghum	mitochondrion	25.78	21.32
OQU86187	Sorghum	mitochondrion, nucleus	26.67	20.34
EES00157	Sorghum	nucleus	22.22	19.23
EES01107	Sorghum	nucleus	30.22	18.84
EER90854	Sorghum	nucleus	27.11	18.43
EES03393	Sorghum	nucleus	33.33	18.29
EES18690	Sorghum	nucleus	32.89	17.45

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	EntrezGene:8075807	UniProt:C5Y2H7	EnsemblPlants:EES08501	ProteinID:EES08501
ProteinID:EES08501.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR003657	InterPro:IPR036576	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31221	PANTHER:PTHR31221:SF25
SMART:SM00774	EnsemblPlantsGene:SORBI_3005G117400	SUPFAM:SSF118290	UniParc:UPI0001A86339	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002449513.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:51657060..51660442

Molecular Weight (calculated)

24241.6 Da

IEP (calculated)

9.455

GRAVY (calculated)

-0.941

Length

225 amino acids

Sequence
(BLAST)

001: MENYHMLFGA ASTHASSAAT PSSYNFMATA AGTSGGGGGG FHDHDRGQRS SGHGGGGSSS SFFAELSSNN DDSKEYGGAS SPPGPAAGSG RGESSVGPAA
101: AAGEVDRPPK RKGEKKERRP RYAFQTRSQV DILDDGYRWR KYGQKAVKNN NFPRSYYRCT HQGCNVKKQV QRLSRDEGVV VTTYEGTHTH PIEKSNDNFE
201: HILTQMQIYS GMGSTFSSSS HNMFH

Best Arabidopsis Sequence Match ( AT5G13080.1 )
(BLAST)

001: MEGYDNGSLY APFLSLKSHS KPELHQGEEE SSKVRSEGCS KSVESSKKKG KKQRYAFQTR SQVDILDDGY RWRKYGQKAV KNNKFPRSYY RCTYGGCNVK
101: KQVQRLTVDQ EVVVTTYEGV HSHPIEKSTE NFEHILTQMQ IYSSF

Arabidopsis Description

WRKY75WRKY75 [Source:UniProtKB/TrEMBL;Acc:A0A178UJF4]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.